View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_high_31 (Length: 211)
Name: NF21135_high_31
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 853674 - 853496
Alignment:
| Q |
14 |
gcataggtgttgatgacaagtgatacagcaactttggagatggatgatgagggtaagctaggaacaattctgataacaaacgatgatggtattgatgctc |
113 |
Q |
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| T |
853674 |
gcataggtgttgatgacaagtgatacagcaactttggagatggatgatgagggtaagctaggaacaattctgataacaaacgatgatggtattgatgctc |
853575 |
T |
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| Q |
114 |
ctggtttgagagctttggttgaatccctggttaacaccaatctttttaatgtcttggtctgtgtgctcctgataggtaagt |
194 |
Q |
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| T |
853574 |
ctggtttgagagctttggttgaatccctcgttaacaccaatctttttaatgtcttggtc--tgtgctcctgataggtaagt |
853496 |
T |
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