View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_13 (Length: 290)
Name: NF21135_low_13
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 7622997 - 7622727
Alignment:
| Q |
18 |
acagacacaagttcagcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622997 |
acagacacaagttcagcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatg |
7622898 |
T |
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| Q |
118 |
aagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622897 |
aagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattact |
7622798 |
T |
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| Q |
218 |
attaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagcctatg |
288 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7622797 |
attgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatg |
7622727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 7627548 - 7627278
Alignment:
| Q |
18 |
acagacacaagttcagcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatg |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627548 |
acagacacaagttcagcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatg |
7627449 |
T |
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| Q |
118 |
aagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattact |
217 |
Q |
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| T |
7627448 |
aagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattact |
7627349 |
T |
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| Q |
218 |
attaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagcctatg |
288 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7627348 |
attgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatg |
7627278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 7634684 - 7634424
Alignment:
| Q |
18 |
acagacacaagttcagcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatg |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7634684 |
acagacacaagttcagcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaacttatatg |
7634585 |
T |
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| Q |
118 |
aagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattact |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || |||||||||||||| |
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| T |
7634584 |
aagacaaatattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccattact |
7634485 |
T |
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| Q |
218 |
attaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaact |
278 |
Q |
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| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7634484 |
agtaccaagagaaacaatagaaaattgtaacatagatggttatgagattaaaccaaaaact |
7634424 |
T |
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