View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21135_low_16 (Length: 280)
Name: NF21135_low_16
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_16 |
 | |
|
| [»] scaffold0193 (2 HSPs) |
| | |
|
| [»] scaffold0247 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0193 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 24268 - 24394
Alignment:
| Q |
138 |
gtgttccatacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggactt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24268 |
gtgttccatacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggactt |
24367 |
T |
|
| Q |
238 |
ttctaaggatgaagctgatttgatttt |
264 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
24368 |
ttctaaggatgaagctgatttaatttt |
24394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 24151 - 24216
Alignment:
| Q |
21 |
tcacgattttatgattatactttagtttagtcttgaaacaaagatttttggaaaacattagccaac |
86 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24151 |
tcacgagtttacgattatacattagtttagtcttgaaacaaagatttttggaaaacattagccaac |
24216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 21861 - 21977
Alignment:
| Q |
146 |
tacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaagg |
245 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||| | |||||||||| |
|
|
| T |
21861 |
tacatgtacttgacaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaatccctacatcaacagggagaatttttctaagg |
21960 |
T |
|
| Q |
246 |
atgaagctgatttgatt |
262 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
21961 |
atgaagttgatttgatt |
21977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 33821958 - 33821885
Alignment:
| Q |
144 |
catacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccct |
217 |
Q |
| |
|
|||| |||||| || ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
33821958 |
catatatgcacttggcaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaaccct |
33821885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 33734676 - 33734574
Alignment:
| Q |
159 |
caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaaggatgaagctgattt |
258 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||| ||||||| ||||| |||| || ||||||||| |||| | |
|
|
| T |
33734676 |
caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttatgccctaacatcaaaagggaaagctttgctgaggatgaagttgatat |
33734577 |
T |
|
| Q |
259 |
gat |
261 |
Q |
| |
|
||| |
|
|
| T |
33734576 |
gat |
33734574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 33749148 - 33749046
Alignment:
| Q |
159 |
caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaaggatgaagctgattt |
258 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||| || ||||||| |||||||||||||| | |
|
|
| T |
33749148 |
caggactgaataggtgcagaaaaagttgtagattgagatggttaaattatttaaacccaaccatcaacagagaaatcttttctgaggatgaagctgatat |
33749049 |
T |
|
| Q |
259 |
gat |
261 |
Q |
| |
|
||| |
|
|
| T |
33749048 |
gat |
33749046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 33867187 - 33867069
Alignment:
| Q |
146 |
tacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaagg |
245 |
Q |
| |
|
|||||| || || |||||||||||||||| || |||||||||||||| || ||| |||||||||||||||| |||||| || ||| |||||| ||| |
|
|
| T |
33867187 |
tacatgtacttggcaggattgaataggtgccggaaaagttgtagattgaggtggttaaattatttaaaccccaccatcaatagagagagtttttctgagg |
33867088 |
T |
|
| Q |
246 |
atgaagctgatttgatttt |
264 |
Q |
| |
|
|||||| |||| ||||||| |
|
|
| T |
33867087 |
atgaagttgatatgatttt |
33867069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 33904738 - 33904633
Alignment:
| Q |
156 |
tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaaggatgaagctga |
255 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || ||| |||||||||||| ||| ||||||| ||||| |||| || ||||||||| ||| |
|
|
| T |
33904738 |
tgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaacccccaacatcaaaagggaaagctttgctgaggatgaagttga |
33904639 |
T |
|
| Q |
256 |
tttgat |
261 |
Q |
| |
|
| |||| |
|
|
| T |
33904638 |
tatgat |
33904633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 33698837 - 33698779
Alignment:
| Q |
158 |
acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc |
216 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| || ||| | |||||||||||||| |
|
|
| T |
33698837 |
acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccc |
33698779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 33763506 - 33763404
Alignment:
| Q |
159 |
caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacagggaggacttttctaaggatgaagctgattt |
258 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||| || ||| |||||||||||| ||| ||||||| ||||| |||| || ||||||||| |||| | |
|
|
| T |
33763506 |
caggattgagtagatgccgaaaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatct |
33763407 |
T |
|
| Q |
259 |
gat |
261 |
Q |
| |
|
||| |
|
|
| T |
33763406 |
gat |
33763404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 33680240 - 33680182
Alignment:
| Q |
159 |
caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccct |
217 |
Q |
| |
|
|||| |||||||| || || |||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
33680240 |
caggtttgaatagatgccggaaaagttgtagattgaggtgggtgaattatttaaaccct |
33680182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 90068 - 90128
Alignment:
| Q |
156 |
tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||| | || ||||||||||| |
|
|
| T |
90068 |
tgacaggattaaataggtgtcgaaaaagttgtagattaaggtggtttaactatttaaaccc |
90128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 5470128 - 5470183
Alignment:
| Q |
158 |
acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaa |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
5470128 |
acaggattgaatagatgtcgaaaaagttgtagattgaggtggataaattatttaaa |
5470183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 21306178 - 21306075
Alignment:
| Q |
158 |
acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacag-ggaggacttttctaaggatgaagctgat |
256 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| || ||| ||||||| |||| ||| |||||||||| ||| || |||||| ||||||||| ||| |
|
|
| T |
21306178 |
acaggattgaatagatgcagaaaaagttgtagattgaggtggttaaattacttaagccccaacatcaacagaggaaga-ttttctgaggatgaagaagat |
21306080 |
T |
|
| Q |
257 |
ttgat |
261 |
Q |
| |
|
||||| |
|
|
| T |
21306079 |
ttgat |
21306075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 149139 - 149064
Alignment:
| Q |
156 |
tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttacatcaacaggga |
231 |
Q |
| |
|
|||||| |||||||||||| || ||||| |||||||| || ||| |||||||||||| ||| ||||||| ||||| |
|
|
| T |
149139 |
tgacagaattgaataggtgccgcaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaaggga |
149064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University