View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21135_low_19 (Length: 271)

Name: NF21135_low_19
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21135_low_19
NF21135_low_19
[»] chr1 (9 HSPs)
chr1 (1-87)||(17414751-17414836)
chr1 (13-87)||(18459536-18459609)
chr1 (1-87)||(13096985-13097070)
chr1 (3-87)||(49915884-49915967)
chr1 (14-82)||(13183698-13183765)
chr1 (53-87)||(52053853-52053887)
chr1 (50-87)||(10544156-10544192)
chr1 (50-87)||(17415342-17415378)
chr1 (54-87)||(18459738-18459771)
[»] chr4 (5 HSPs)
chr4 (17-87)||(24972223-24972292)
chr4 (55-95)||(8346266-8346306)
chr4 (17-58)||(13557545-13557586)
chr4 (53-87)||(13557456-13557490)
chr4 (53-87)||(48007280-48007314)
[»] chr6 (2 HSPs)
chr6 (3-87)||(12309844-12309927)
chr6 (53-87)||(17945287-17945321)
[»] chr8 (4 HSPs)
chr8 (11-81)||(10719569-10719646)
chr8 (51-87)||(8051919-8051955)
chr8 (60-96)||(23679592-23679628)
chr8 (59-95)||(35702441-35702477)
[»] chr5 (3 HSPs)
chr5 (53-96)||(7725538-7725581)
chr5 (53-87)||(38378228-38378262)
chr5 (53-87)||(8383979-8384013)
[»] chr7 (5 HSPs)
chr7 (53-87)||(13298785-13298819)
chr7 (17-58)||(9691168-9691209)
chr7 (53-96)||(4125480-4125523)
chr7 (53-96)||(24507852-24507895)
chr7 (53-87)||(9691079-9691113)
[»] scaffold0276 (1 HSPs)
scaffold0276 (53-96)||(2095-2138)
[»] chr2 (1 HSPs)
chr2 (14-59)||(3350801-3350846)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17414836 - 17414751
Alignment:
Q  1 aagtatcttgagcatcaagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatattttata 87  Q
    |||||||||| |||||||||||||||||||||||  |||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  17414836 aagtatcttgggcatcaagtatctttaacttggtcctcaattatatctaaataatat-ctaataatttatacaatgaatattttata 17414751  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 18459536 - 18459609
Alignment:
Q  13 catcaagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatattttata 87  Q
    ||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  18459536 catcaagtatctttaacttggtcctcaattatctctaaataatat-ctaataatttatacaatgaatattttata 18459609  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 13097070 - 13096985
Alignment:
Q  1 aagtatcttgagcatcaagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatattttata 87  Q
    ||||||||||  ||| ||||||||||||||||||  |||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  13097070 aagtatcttggacattaagtatctttaacttggtcctcaattttctctaaataatat-ctaataatttatacaatgaatattttata 13096985  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 49915967 - 49915884
Alignment:
Q  3 gtatcttgagcatcaagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatattttata 87  Q
    ||||||||  |||||| |||||||||||||||  |||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  49915967 gtatcttggacatcaaatatctttaacttggtcctcaattatctctaaatagtat-ctaataatttatacaatgaatattttata 49915884  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 13183698 - 13183765
Alignment:
Q  14 atcaagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatatt 82  Q
    ||||||||||||||| |||||  |||||||||||| | | | || ||||||||||||||||||||||||    
T  13183698 atcaagtatctttaatttggtcttcaattatctctaagtcacat-ctaataatttatacaatgaatatt 13183765  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 52053853 - 52053887
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    |||||| ||||||||||||||||||||||||||||    
T  52053853 aatatattaataatttatacaatgaatattttata 52053887  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 10544156 - 10544192
Alignment:
Q  50 aataatatactaataatttatacaatgaatattttata 87  Q
    |||||||| |||||||||||||||||||||||||||||    
T  10544156 aataatat-ctaataatttatacaatgaatattttata 10544192  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 17415342 - 17415378
Alignment:
Q  50 aataatatactaataatttatacaatgaatattttata 87  Q
    |||||||| |||||||||||||||||||||||||||||    
T  17415342 aataatat-ctaataatttatacaatgaatattttata 17415378  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 18459738 - 18459771
Alignment:
Q  54 atatactaataatttatacaatgaatattttata 87  Q
    |||| |||||||||||||||||||||||||||||    
T  18459738 atattctaataatttatacaatgaatattttata 18459771  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 24972223 - 24972292
Alignment:
Q  17 aagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatattttata 87  Q
    ||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  24972223 aagtatctttaacttggtcctcaattatctctaaataatat-ctaataatttatacaatgaatattttata 24972292  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 8346306 - 8346266
Alignment:
Q  55 tatactaataatttatacaatgaatattttatagtttaata 95  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  8346306 tatactaataatttatacaatgaatattttatattttaata 8346266  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 13557545 - 13557586
Alignment:
Q  17 aagtatctttaacttggttgtcaattatctctcaataatata 58  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  13557545 aagtatctttaacttggtcctcaattatctctcaataatata 13557586  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 13557490 - 13557456
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    ||||||||||||||||| |||||||||||||||||    
T  13557490 aatatactaataatttacacaatgaatattttata 13557456  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 48007280 - 48007314
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    |||||| ||||||||||||||||||||||||||||    
T  48007280 aatatattaataatttatacaatgaatattttata 48007314  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 12309844 - 12309927
Alignment:
Q  3 gtatcttgagcatcaagtatctttaacttggttgtcaattatctctcaataatatactaataatttatacaatgaatattttata 87  Q
    ||||||||  ||||||||||||||||||||||  |||||||||||| |||||| | |||||||||||||||||||||| ||||||    
T  12309844 gtatcttggacatcaagtatctttaacttggtcctcaattatctctaaataatct-ctaataatttatacaatgaataatttata 12309927  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 17945287 - 17945321
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    ||||||| |||||||||||||||||||||||||||    
T  17945287 aatatacaaataatttatacaatgaatattttata 17945321  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 10719569 - 10719646
Alignment:
Q  11 agcatcaagtatctttaacttggttgtcaattatctctcaata-------atatactaataatttatacaatgaatat 81  Q
    ||||||||||||||||||||||||  |||||||||||| ||||       ||||||||||||||||||||||||||||    
T  10719569 agcatcaagtatctttaacttggtcctcaattatctctaaataatatactatatactaataatttatacaatgaatat 10719646  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 8051919 - 8051955
Alignment:
Q  51 ataatatactaataatttatacaatgaatattttata 87  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8051919 ataatatattaataatttatacaatgaatattttata 8051955  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 23679628 - 23679592
Alignment:
Q  60 taataatttatacaatgaatattttatagtttaatag 96  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23679628 taataatttatacaatgaatattttatattttaatag 23679592  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 35702477 - 35702441
Alignment:
Q  59 ctaataatttatacaatgaatattttatagtttaata 95  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35702477 ctaataatttatacaatgaatattttatattttaata 35702441  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 7725581 - 7725538
Alignment:
Q  53 aatatactaataatttatacaatgaatattttatagtttaatag 96  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  7725581 aatatactaataatttatacaatgaatattttatattctaatag 7725538  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 38378262 - 38378228
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    |||||||||||||||||||||||||||||||||||    
T  38378262 aatatactaataatttatacaatgaatattttata 38378228  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 8384013 - 8383979
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    |||||| ||||||||||||||||||||||||||||    
T  8384013 aatatattaataatttatacaatgaatattttata 8383979  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 13298819 - 13298785
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    |||||||||||||||||||||||||||||||||||    
T  13298819 aatatactaataatttatacaatgaatattttata 13298785  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 9691168 - 9691209
Alignment:
Q  17 aagtatctttaacttggttgtcaattatctctcaataatata 58  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  9691168 aagtatctttaacttggtcctcaattatctctcaataatata 9691209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 4125523 - 4125480
Alignment:
Q  53 aatatactaataatttatacaatgaatattttatagtttaatag 96  Q
    |||||| |||||||||||||||||||||||||||| | ||||||    
T  4125523 aatatattaataatttatacaatgaatattttatattctaatag 4125480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 24507852 - 24507895
Alignment:
Q  53 aatatactaataatttatacaatgaatattttatagtttaatag 96  Q
    |||| |||||||||||||||||||||||||||||| | ||||||    
T  24507852 aataaactaataatttatacaatgaatattttatattctaatag 24507895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 9691113 - 9691079
Alignment:
Q  53 aatatactaataatttatacaatgaatattttata 87  Q
    ||||||||||||||||| |||||||||||||||||    
T  9691113 aatatactaataatttacacaatgaatattttata 9691079  T

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Target: scaffold0276 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 2095 - 2138
Alignment:
Q  53 aatatactaataatttatacaatgaatattttatagtttaatag 96  Q
    |||||| |||||||||||||||||||||||||||| | ||||||    
T  2095 aatatattaataatttatacaatgaatattttatattctaatag 2138  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 3350801 - 3350846
Alignment:
Q  14 atcaagtatctttaacttggttgtcaattatctctcaataatatac 59  Q
    ||||| |||||||||||||||  |||||||||||| ||||||||||    
T  3350801 atcaaatatctttaacttggtcctcaattatctctaaataatatac 3350846  T

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