View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21135_low_22 (Length: 247)
Name: NF21135_low_22
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_22 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38849648 - 38849877
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38849648 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
38849747 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38849748 |
aaaccaatgaagttaaacaaattcaagatagaatgtaatttaagtgttgatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
38849847 |
T |
|
| Q |
201 |
ttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
38849848 |
ttaatttcttttgtaatggcatgctagaag |
38849877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38317688 - 38317459
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| |||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
38317688 |
tgactcatctaagtaaacatcaagttgagattttctagtttcagtaacaagctgccgttggtgcactttcaattcctattatatttcacacgtgaaaagg |
38317589 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||| || || | || ||||||||||||| |||||||||| |||||||| ||||||||||||| |
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|
| T |
38317588 |
aaagcaatgaggttaaacaaattcaaggtggaaagtaattaaattgctgattcaaaaaatatatataaacttacattgaataggccgtgagataaagact |
38317489 |
T |
|
| Q |
201 |
ttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
|||||||||| || ||||||||| |||||| |
|
|
| T |
38317488 |
ttaatttcttttgcaatggcatggtagaag |
38317459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38306935 - 38306706
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| | || |||||||||||||| |||||||||||||||| | |
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|
| T |
38306935 |
tgactcatctaagtaaacatcaagttgagacttttcagtttcggtaacaagctgttgatgtttcattttcaattcctattgtatttcacaagtgaaaaag |
38306836 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
200 |
Q |
| |
|
||| ||| || |||||||||||||||||||||| |||||| || ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38306835 |
aaatcaacgaggttaaacaaattcaagatagaaagtaattaaattgttagttcaaaaaatatatatgaacttacatcaaataggccatgagataaagact |
38306736 |
T |
|
| Q |
201 |
ttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
| ||||| || ||||||||| |||||| |
|
|
| T |
38306735 |
cagagttcttttgcaatggcatggtagaag |
38306706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38321777 - 38321554
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||| || |||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
38321777 |
tgactcagctaagtaaatatcaagttgggattttccagt------aacaagctgctcatggtgagttttcaattcctattatatttcacaagtgaaaagg |
38321684 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
200 |
Q |
| |
|
| ||||| || ||||||||||||||||||||| ||||||| || | | ||| | ||||||||||| |||||||||||||||||||| |||||| |||||| |
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|
| T |
38321683 |
acagcaacgaggttaaacaaattcaagatagagtgtaattaaattatgaattccaaaaatatatataaacttacatcaaataggccgtgagatgaagact |
38321584 |
T |
|
| Q |
201 |
ttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
| |||||||| || |||||||||||||||| |
|
|
| T |
38321583 |
tcaatttcttttgcaatggcatgctagaag |
38321554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38309677 - 38309456
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||||||||||| | ||||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
38309677 |
tgactcatctaagtaaacatcaagttgagatttttcagtttcagtaacaagctgccgttggtgcactttcaattcctattatatctcacacgtgaaaagg |
38309578 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| || || ||| |||||| | | ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38309577 |
aaagcaatgaggttaaacaaattcaagaaagaa--------aattgccaattcaaaaacaaaaaaaatacttacatcaaataggccctgagataaagact |
38309486 |
T |
|
| Q |
201 |
ttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
|||| ||||| || ||||||| ||||||| |
|
|
| T |
38309485 |
ttaacttcttttgcaatggcacactagaag |
38309456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38314278 - 38314048
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||| ||||||||||| |||| | |
|
|
| T |
38314278 |
tgactcgtcaaagtaaacatcaagttcagactttccagttttagtaacaagctgttgatggtgcattttcaattcatattatatttcacaagttaaaaag |
38314179 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaata-tataaaaacttacatcaaataggccatgagataaagac |
199 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |||||| || |||| || ||||||| | |||| |||| |||||||| |||| | ||||| ||||| |
|
|
| T |
38314178 |
aaagcaataaggttaaacaaattcaagatagaaagtaattaaattgttgattcaaaaaaaattatataaacgtacatcaactaggtcgagagatgaagac |
38314079 |
T |
|
| Q |
200 |
tttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
| | ||||| || ||||||||| |||||| |
|
|
| T |
38314078 |
tcagagttcttttgcaatggcatggtagaag |
38314048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38301035 - 38300809
Alignment:
| Q |
1 |
tgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
38301035 |
tgactcatctaagtaaacatcaagttcagatttcccagtttcagtaacaagctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagg |
38300936 |
T |
|
| Q |
101 |
aaagcaatgaagttaaacaaattcaagatagaatgtaatttaagtgttaatccaaaaaatatataaaaacttacatcaaataggccatgagataaagact |
200 |
Q |
| |
|
|||||||| |||||| ||||| |||| |||| | || || || ||| |||||| ||| |||||||||||||||||||| | ||||||||| | |
|
|
| T |
38300935 |
gaagcaatggggttaaaaaaattaaagaaagaaagaaagaaaattgccaattaaaaaaa---atataaacttacatcaaataggccgtcagataaagagt |
38300839 |
T |
|
| Q |
201 |
ttaatttcttctgtaatggcatgctagaag |
230 |
Q |
| |
|
|||| |||| || |||||||||||||||| |
|
|
| T |
38300838 |
ttaacttctcttgaaatggcatgctagaag |
38300809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 38326485 - 38326380
Alignment:
| Q |
5 |
tcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttcacaagtgaaaaggaaag |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38326485 |
tcatccaagtaaacatcaagttgagactttccagt------aacaagttgttgatggtgcattttcaattcctattacatttcacaagtgaaaaggaaag |
38326392 |
T |
|
| Q |
105 |
caatgaagttaa |
116 |
Q |
| |
|
||| || ||||| |
|
|
| T |
38326391 |
caacgaggttaa |
38326380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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