View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_23 (Length: 246)
Name: NF21135_low_23
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_23 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 38849374 - 38849603
Alignment:
| Q |
17 |
aaatataaatataatttagagaattaccctcgctnnnnnnnttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatc |
116 |
Q |
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| T |
38849374 |
aaatataaatataatttagagaattaccctcgctaaaaaaattgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatc |
38849473 |
T |
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| Q |
117 |
tttatacttgttaaagacacgtgagcccatgcaaaattcagaatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgataga |
216 |
Q |
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| T |
38849474 |
tttatacttgttaaagacacgtgagcccatgcaaaattcagaatcagaagctacagcggcaatgggaacacttaacaagtcgcaggccaatattgataga |
38849573 |
T |
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| Q |
217 |
tccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38849574 |
tccggaaatcgatcattattactcttccac |
38849603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38307168 - 38306980
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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| T |
38307168 |
ttgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcgtgagcccatgcaaaattcaa |
38307069 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38307068 |
aatcagaagccacagtggtaatgggaacacttaacaagtcacaagccagtattgatagatctggatatcgatcattattactcttccac |
38306980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38317921 - 38317733
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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| T |
38317921 |
ttgtataaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacacgtgaacccatgcaaaattcag |
38317822 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38317821 |
aatcagaagcaacagtggcaatgggaacacttaacaagtcgcaagctaatattgatagatccggaaatcgattattatttctcttccac |
38317733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38301268 - 38301080
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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|||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
38301268 |
ttgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcgtgagcccatgcaaaactcaa |
38301169 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38301168 |
aatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttccac |
38301080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38314511 - 38314323
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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| T |
38314511 |
ttgtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttatacttgtttaacacacgtgagcccatgcaaaattcaa |
38314412 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38314411 |
aatcagaagccactgtggcaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgatttgaattactcttccac |
38314323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38309910 - 38309722
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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|||| ||||||| |||||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |
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| T |
38309910 |
ttgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgagcccatgcaaaactcaa |
38309811 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38309810 |
aatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctcttccac |
38309722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38326722 - 38326534
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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|||||||||||||||| |||||| ||||| |||||||||||||| |||| |||| | ||||||||||| | ||| || |||| |||||||||||||| |
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| T |
38326722 |
ttgtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtctttatacttttcaaatacgcgtgcacccatgcaaaattcca |
38326623 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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| T |
38326622 |
aatcagatgcgacagtggcaatgggaacacttaacaagtcacaagccaaaattgatagatctggaaatcaattataattactcttccac |
38326534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 38322010 - 38321822
Alignment:
| Q |
58 |
ttgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcag |
157 |
Q |
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|||||||||||| |||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||| || | |||| |||||||| || |
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| T |
38322010 |
ttgtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcctatgcaaaaatcca |
38321911 |
T |
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| Q |
158 |
aatcagaagctacagcagcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccac |
246 |
Q |
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|||||||||| | || || |||||||||||||||||| | ||||||||||| ||||| |||||||||| |||||||||||||||| |
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| T |
38321910 |
aatcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccac |
38321822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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