View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21135_low_27 (Length: 227)
Name: NF21135_low_27
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_27 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 26397556 - 26397340
Alignment:
| Q |
11 |
acataaacaaatgttatggttgcctactatgttaaatgaatgtcaatatgaatatgtaaataggtacggggcagaaaatcactaaggaggagggaagcag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26397556 |
acataaacaaatgttatggttgcctactatgttaaatgaatgtcaatatgaatatgtaaataggtacggggcagaaaatcactaaggagaagggaagcag |
26397457 |
T |
|
| Q |
111 |
gaaaggagattgcctgttgtaataaagcgcacaattttcaagttgttttgcatctttgtcgtttattatagatcaaacggttcaaattaaggcagttata |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26397456 |
gaaaggagattgcctgttataataaagcgcacaattttcaagttgttttgcatctttgtcgtttattatagatcaaacagttcaaattaaggcagttata |
26397357 |
T |
|
| Q |
211 |
aaatcattgtaaacaat |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26397356 |
aaatcattgtaaacaat |
26397340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 31219613 - 31219565
Alignment:
| Q |
179 |
tagatcaaacggttcaaattaaggcagttataaaatcattgtaaacaat |
227 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
31219613 |
tagatcaaacagtttaaattaactcagttataaaatcattctaaacaat |
31219565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 47812858 - 47812910
Alignment:
| Q |
175 |
attatagatcaaacggttcaaattaaggcagttataaaatcattgtaaacaat |
227 |
Q |
| |
|
|||| |||||||| ||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
47812858 |
attaaagatcaaatggttcaaatcaatgcagttataaaatcattcaaaacaat |
47812910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University