View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_28 (Length: 222)
Name: NF21135_low_28
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 52574167 - 52574375
Alignment:
| Q |
1 |
aggtatacaagtcattcatttctcaccgaaccattctccctctttctttagaatcagtatttacaacttaatgctaaacaagtaatttgtggctgccttc |
100 |
Q |
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| T |
52574167 |
aggtatacaagtcattcatttctcaccgaaccattctccctctttctttggaatcagtatttacaacttaatgctaaacaagtaatttgtggctgacttc |
52574266 |
T |
|
| Q |
101 |
agtgaaacttccttgagaaccactgcaatttctatgtgacgacatatggtactccagaaacctctctttcactctcccacacgctttctttcccatagtc |
200 |
Q |
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| T |
52574267 |
agtgaaacttccttgagaaccactgcaatttctatgtgacgacatatggtactcctgaaacctctctttcactctcccacacgctttctttcccatagtc |
52574366 |
T |
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| Q |
201 |
agcctcttc |
209 |
Q |
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||||||||| |
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| T |
52574367 |
agcctcttc |
52574375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 52576352 - 52576463
Alignment:
| Q |
94 |
tgccttcagtgaaacttccttgagaaccactgcaatttctatgtgacgacatatggtactccagaaacctctctttcactctcccacacgctttctttcc |
193 |
Q |
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||||||| || ||| |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| || || || |||||||||| |
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| T |
52576352 |
tgccttccgtaaaatttccttgagaaccactgcaatt-ctatgtgac---atatggcgctccagaaacctctctttcactttctcataccctttctttcc |
52576447 |
T |
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| Q |
194 |
catagtcagcctcttc |
209 |
Q |
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|||||||||||||||| |
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| T |
52576448 |
catagtcagcctcttc |
52576463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 52576249 - 52576316
Alignment:
| Q |
4 |
tatacaagtcattcatttctcaccgaaccattctccctctttctttagaatcagtatttacaacttaatg |
73 |
Q |
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||||||| |||||||||||| ||||||||| ||| ||| ||||||| |||||| |||||||| |||||| |
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| T |
52576249 |
tatacaactcattcatttctaaccgaaccactcttcctttttctttggaatca--atttacaatttaatg |
52576316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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