View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_29 (Length: 221)
Name: NF21135_low_29
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 52716849 - 52716657
Alignment:
| Q |
14 |
aatgagatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatctctgcatcagtttg |
113 |
Q |
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| T |
52716849 |
aatgagatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatctctgcatcagtttg |
52716750 |
T |
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| Q |
114 |
aagtggttctctaccgttaagcgaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataag |
206 |
Q |
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| T |
52716749 |
aagtggttctctaccgttaagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataag |
52716657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 52711541 - 52711356
Alignment:
| Q |
14 |
aatgagatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatctctgcatcagtttg |
113 |
Q |
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|||||||||||||||| || |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
52711541 |
aatgagatttgttaaacgatccagatgcaatagagtttgtagttgatcttttaacaacaacgtgaagtttaccatcttcacctgtctctgcatcagtttg |
52711442 |
T |
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| Q |
114 |
aagtggttctctaccgttaagcgaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctg |
199 |
Q |
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| T |
52711441 |
aagtgtttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctg |
52711356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 33102441 - 33102380
Alignment:
| Q |
136 |
gaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttc |
197 |
Q |
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| T |
33102441 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
33102380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 34971296 - 34971172
Alignment:
| Q |
73 |
acatgaagtttaccatcttcacctatctctgcatcagtttgaagtggttctctaccgttaagcgaaacaacgtcagaatcaactttgaatgatgttatag |
172 |
Q |
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||||||||||||||||||||||| | || || |||||||||||||| ||| |||| | | |||| ||| ||||||||||||||||||||| | |||| |
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| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
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| Q |
173 |
aagctgcagtttcaggaaactgttc |
197 |
Q |
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|| | ||||| |||||||||||||| |
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| T |
34971196 |
aaccagcagtatcaggaaactgttc |
34971172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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