View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_30 (Length: 213)
Name: NF21135_low_30
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_30 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0640 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 3547 - 3732
Alignment:
| Q |
12 |
tgataagaaaccataatatcagttgcttacttcacaattgcaggacattttaatttcctcaattatcaattcagttcacaaggcaatgcagtataataat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3547 |
tgataagaaaccataatatcagttgcttacttcacaattgcggaacattttaatttcctcaattatcaattcagttcacaaggcaatgcagtataataat |
3646 |
T |
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| Q |
112 |
ttcctcagttaaacaattaatacattaattgtcagtcattaatacgacataaattctcagcaactgaacatgtcctatcaaaaagg |
197 |
Q |
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| T |
3647 |
ttcctcagttaaacaattaatacattaattgtcagtaattaatacggcataaattctcagcaactgaacatgtcctatcaaaaagg |
3732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 24111 - 24296
Alignment:
| Q |
12 |
tgataagaaaccataatatcagttgcttacttcacaattgcaggacattttaatttcctcaattatcaattcagttcacaaggcaatgcagtataataat |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24111 |
tgataagaaaccataatatcaattgcttacttcacaattgcggaacattttaatttcctcaattataaattcagttcacaaggcaatgcagtataataat |
24210 |
T |
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| Q |
112 |
ttcctcagttaaacaattaatacattaattgtcagtcattaatacgacataaattctcagcaactgaacatgtcctatcaaaaagg |
197 |
Q |
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| T |
24211 |
ttcctcaattaaacaattaatacattaattgtcagtaattaatacggcataaattctcagcaactgaacatgtcctatcaaaaagg |
24296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 41407387 - 41407202
Alignment:
| Q |
12 |
tgataagaaaccataatatcagttgcttacttcacaattgcaggacattttaatttcctcaattatcaattcagttcacaaggcaatgcagtataataat |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41407387 |
tgataagaaaccataatatcaattgcttacttcacaattgcggaacattttaatttcctcaattataaattcagttcacaaggcaatgcagtataataat |
41407288 |
T |
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| Q |
112 |
ttcctcagttaaacaattaatacattaattgtcagtcattaatacgacataaattctcagcaactgaacatgtcctatcaaaaagg |
197 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41407287 |
ttcctcaattaaacaattaatacattaattgtcagtaattaatacggcataaattctcagcaactgaacatgtcctatcaaaaagg |
41407202 |
T |
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