View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21135_low_4 (Length: 591)

Name: NF21135_low_4
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21135_low_4
NF21135_low_4
[»] chr7 (3 HSPs)
chr7 (1-467)||(28819090-28819555)
chr7 (466-573)||(25341543-25341650)
chr7 (466-573)||(31012501-31012608)
[»] chr4 (6 HSPs)
chr4 (462-573)||(18140370-18140481)
chr4 (462-573)||(49127583-49127694)
chr4 (464-573)||(24038160-24038269)
chr4 (464-573)||(39383056-39383165)
chr4 (466-573)||(31431134-31431241)
chr4 (464-573)||(24246538-24246647)
[»] chr1 (11 HSPs)
chr1 (463-573)||(26821379-26821489)
chr1 (464-573)||(38627536-38627645)
chr1 (464-573)||(50979334-50979443)
chr1 (465-573)||(7593302-7593410)
chr1 (466-573)||(15353228-15353335)
chr1 (466-573)||(38843151-38843258)
chr1 (467-573)||(5271602-5271708)
chr1 (467-573)||(36496150-36496256)
chr1 (466-573)||(51488594-51488701)
chr1 (466-573)||(27000365-27000472)
chr1 (470-560)||(27575898-27575989)
[»] chr6 (1 HSPs)
chr6 (464-573)||(30018771-30018880)
[»] chr5 (5 HSPs)
chr5 (464-573)||(33114954-33115063)
chr5 (467-573)||(29542540-29542646)
chr5 (464-573)||(42663354-42663463)
chr5 (466-573)||(3260937-3261044)
chr5 (467-573)||(14082814-14082920)
[»] chr3 (6 HSPs)
chr3 (464-573)||(51129113-51129222)
chr3 (466-573)||(47141500-47141607)
chr3 (466-573)||(1527531-1527638)
chr3 (466-573)||(47696999-47697106)
chr3 (466-573)||(52691927-52692034)
chr3 (465-573)||(38469067-38469175)
[»] chr2 (6 HSPs)
chr2 (464-573)||(44282492-44282601)
chr2 (466-573)||(14379660-14379767)
chr2 (466-573)||(31786699-31786806)
chr2 (466-573)||(40254344-40254451)
chr2 (475-573)||(31686886-31686984)
chr2 (470-560)||(2443777-2443868)
[»] chr8 (5 HSPs)
chr8 (466-573)||(30210394-30210501)
chr8 (466-573)||(30984400-30984507)
chr8 (466-573)||(34774446-34774553)
chr8 (510-573)||(629523-629586)
chr8 (466-509)||(308872-308915)


Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 28819555 - 28819090
Alignment:
Q  1 tacgaatctgaaccttacctacctctcttacagtcagagtatctttgcctaacaattgaatcgagaaataatacctccactaacatgatctagtgaaact 100  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28819555 tacgaatctga-ccttacctacctctcttacagtcagactatctttgcctaacaattgaatcgagaaataatacctccactaacatgatctagtgaaact 28819457  T
Q  101 atttgcagagagattattattttgcatttcacatgttcatgcatgcattatataaaaacaaattgtattacaacttgctaaaacttaccaaatatctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28819456 atttgcagagagattattattttgcatttcacatgttcatgcatgcattatataaaaacaaattgtattacaacttgctaaaacttaccaaatatctttc 28819357  T
Q  201 nnnnnnnaaacttttatggtggctaatttattttataaaatcaaaagagcatgcatttaataatctcttgttattaaaatatacagtgtaaaatttgatg 300  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28819356 tttttttaaacttttatggtggctaatttattttataaaatcaaaagagcatgcatttaataatctcttgttattaaaatatacagtataaaatttgatg 28819257  T
Q  301 gcccttgtatgtggaatgttgagttgctttcattgatttatatctttcacttggataacttaatgtaagtaaaagacaaaacgccacaactttaaaaatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28819256 gcccttgtatgtggaatgttgagttgctttcattgatttatatctttcacttggataacttaatgtaagtaaaagacaaaacgccacaactttaaaaatg 28819157  T
Q  401 gcctataatactgggtttgtgtgttgatacttattttttaaccattttctcagttggagtttctaag 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28819156 gcctataatactgggtttgtgtgttgatacttattttttaaccattttctcagttggagtttctaag 28819090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 25341650 - 25341543
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25341650 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 25341551  T
Q  566 tagctttt 573  Q
    ||||||||    
T  25341550 tagctttt 25341543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 31012608 - 31012501
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31012608 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31012509  T
Q  566 tagctttt 573  Q
    ||||||||    
T  31012508 tagctttt 31012501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 462 - 573
Target Start/End: Original strand, 18140370 - 18140481
Alignment:
Q  462 tctaagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttt 561  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18140370 tctatgcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttt 18140469  T
Q  562 aaaatagctttt 573  Q
    ||||||||||||    
T  18140470 aaaatagctttt 18140481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 462 - 573
Target Start/End: Original strand, 49127583 - 49127694
Alignment:
Q  462 tctaagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttt 561  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49127583 tctatgcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttt 49127682  T
Q  562 aaaatagctttt 573  Q
    ||||||||||||    
T  49127683 aaaatagctttt 49127694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Complemental strand, 24038269 - 24038160
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24038269 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 24038170  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  24038169 aatagctttt 24038160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Complemental strand, 39383165 - 39383056
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39383165 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 39383066  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  39383065 aatagctttt 39383056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 31431241 - 31431134
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31431241 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31431142  T
Q  566 tagctttt 573  Q
    ||||||||    
T  31431141 tagctttt 31431134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 464 - 573
Target Start/End: Original strand, 24246538 - 24246647
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  24246538 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattatgcaatatttaacatgtttggtttggcttttcaa 24246637  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  24246638 aatagctttt 24246647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 463 - 573
Target Start/End: Original strand, 26821379 - 26821489
Alignment:
Q  463 ctaagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttta 562  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26821379 ctaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttca 26821478  T
Q  563 aaatagctttt 573  Q
    |||||||||||    
T  26821479 aaatagctttt 26821489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Original strand, 38627536 - 38627645
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38627536 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 38627635  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  38627636 aatagctttt 38627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Complemental strand, 50979443 - 50979334
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50979443 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 50979344  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  50979343 aatagctttt 50979334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 465 - 573
Target Start/End: Complemental strand, 7593410 - 7593302
Alignment:
Q  465 aagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaa 564  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7593410 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 7593311  T
Q  565 atagctttt 573  Q
    |||||||||    
T  7593310 atagctttt 7593302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 15353228 - 15353335
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15353228 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 15353327  T
Q  566 tagctttt 573  Q
    ||||||||    
T  15353328 tagctttt 15353335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 38843151 - 38843258
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38843151 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 38843250  T
Q  566 tagctttt 573  Q
    ||||||||    
T  38843251 tagctttt 38843258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 5271708 - 5271602
Alignment:
Q  467 gcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 566  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5271708 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 5271609  T
Q  567 agctttt 573  Q
    |||||||    
T  5271608 agctttt 5271602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 36496256 - 36496150
Alignment:
Q  467 gcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 566  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36496256 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 36496157  T
Q  567 agctttt 573  Q
    |||||||    
T  36496156 agctttt 36496150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 51488701 - 51488594
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  51488701 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 51488602  T
Q  566 tagctttt 573  Q
    ||||||||    
T  51488601 tagctttt 51488594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 27000472 - 27000365
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  27000472 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatatttggtttggcttttcaaaa 27000373  T
Q  566 tagctttt 573  Q
    ||| ||||    
T  27000372 tagttttt 27000365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 560
Target Start/End: Original strand, 27575898 - 27575989
Alignment:
Q  470 tctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggctttt 560  Q
    |||||||||||||||||||| | ||  |||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||| |||||    
T  27575898 tctgtttggtttggcttttgtacagctagaagcaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttgactttt 27575989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Original strand, 30018771 - 30018880
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30018771 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 30018870  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  30018871 aatagctttt 30018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Original strand, 33114954 - 33115063
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33114954 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 33115053  T
Q  564 aatagctttt 573  Q
    ||||| ||||    
T  33115054 aatagttttt 33115063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 29542646 - 29542540
Alignment:
Q  467 gcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 566  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29542646 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 29542547  T
Q  567 agctttt 573  Q
    |||||||    
T  29542546 agctttt 29542540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 464 - 573
Target Start/End: Original strand, 42663354 - 42663463
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  42663354 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaa 42663453  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  42663454 aatagctttt 42663463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 3261044 - 3260937
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  3261044 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 3260945  T
Q  566 tagctttt 573  Q
    ||||||||    
T  3260944 tagctttt 3260937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 467 - 573
Target Start/End: Original strand, 14082814 - 14082920
Alignment:
Q  467 gcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 566  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  14082814 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctacaatatttaacatgtttggtttgactttttaaaat 14082913  T
Q  567 agctttt 573  Q
    |||||||    
T  14082914 agctttt 14082920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Complemental strand, 51129222 - 51129113
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51129222 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 51129123  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  51129122 aatagctttt 51129113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 47141607 - 47141500
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47141607 agcctctgtttggtttggcatttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 47141508  T
Q  566 tagctttt 573  Q
    ||||||||    
T  47141507 tagctttt 47141500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 1527531 - 1527638
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||     
T  1527531 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaac 1527630  T
Q  566 tagctttt 573  Q
    ||||||||    
T  1527631 tagctttt 1527638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 47696999 - 47697106
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  47696999 agcctctgtttggtttggcttttgcaaagccagaatcaattctgaagcatttcaaaagcaattctgcaatatttaacatgtttggtttgccttttcaaaa 47697098  T
Q  566 tagctttt 573  Q
    ||||||||    
T  47697099 tagctttt 47697106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 52691927 - 52692034
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  52691927 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttaaaaa 52692026  T
Q  566 tagctttt 573  Q
    ||| ||||    
T  52692027 tagatttt 52692034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 465 - 573
Target Start/End: Original strand, 38469067 - 38469175
Alignment:
Q  465 aagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaa 564  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  38469067 aagcctctgtttggtttggcttttgcaaagccagaatcaattatggagcatttcaaaagcaattctgcaatatttaacatgtttggtttaccttttcaaa 38469166  T
Q  565 atagctttt 573  Q
    |||| ||||    
T  38469167 atagttttt 38469175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 464 - 573
Target Start/End: Original strand, 44282492 - 44282601
Alignment:
Q  464 taagcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 563  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44282492 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 44282591  T
Q  564 aatagctttt 573  Q
    ||||||||||    
T  44282592 aatagctttt 44282601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 14379660 - 14379767
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14379660 agcctccgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 14379759  T
Q  566 tagctttt 573  Q
    ||||||||    
T  14379760 tagctttt 14379767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 31786699 - 31786806
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31786699 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31786798  T
Q  566 tagctttt 573  Q
    ||||||||    
T  31786799 tagctttt 31786806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 40254344 - 40254451
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40254344 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 40254443  T
Q  566 tagctttt 573  Q
    ||||||||    
T  40254444 tagctttt 40254451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 475 - 573
Target Start/End: Complemental strand, 31686984 - 31686886
Alignment:
Q  475 ttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaatagctttt 573  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31686984 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttt 31686886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 560
Target Start/End: Complemental strand, 2443868 - 2443777
Alignment:
Q  470 tctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggctttt 560  Q
    |||||||||||||||||||| | ||   ||| |||||||  | |||| ||||||||||||| ||| |||| || ||||||||||||||||||    
T  2443868 tctgtttggtttggcttttgtacagctggaaacaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttggctttt 2443777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Original strand, 30210394 - 30210501
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30210394 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30210493  T
Q  566 tagctttt 573  Q
    ||||||||    
T  30210494 tagctttt 30210501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 30984507 - 30984400
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30984507 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30984408  T
Q  566 tagctttt 573  Q
    ||||||||    
T  30984407 tagctttt 30984400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 34774553 - 34774446
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 565  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774553 agcctctgtttggtttggcttttgcaaagccagaatcaattttggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 34774454  T
Q  566 tagctttt 573  Q
    ||| ||||    
T  34774453 tagttttt 34774446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 510 - 573
Target Start/End: Complemental strand, 629586 - 629523
Alignment:
Q  510 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaatagctttt 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  629586 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttt 629523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 509
Target Start/End: Original strand, 308872 - 308915
Alignment:
Q  466 agcctctgtttggtttggcttttgcaaagtcagaatcaattctg 509  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  308872 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 308915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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