View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_5 (Length: 547)
Name: NF21135_low_5
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 24 - 536
Target Start/End: Complemental strand, 32187272 - 32186758
Alignment:
| Q |
24 |
tatacatgcatgcacacacacaatattctatttttataaagttccaaagatacttcagt-caaatggtatagtattttcacaatgaaaaaa--tatctag |
120 |
Q |
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| T |
32187272 |
tatacatgcatgcatacacacaatattctatttgtataaagttccaaagatacttcagttcaaatggtatagtattttcacaatgaaaaaaaatatctag |
32187173 |
T |
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| Q |
121 |
atatagatatttttaggaaagggtctaaagtaa-gccctaaattatttcttgttgcccctattatcgccgcaacacaaaaactcttgttgccctaaaata |
219 |
Q |
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| T |
32187172 |
atatagatatttttaggaaagggtctaaagtaaagccctaaattatttcttgttgcccctattatcgccgcaacacaaaaactcttgttgccctaaaata |
32187073 |
T |
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| Q |
220 |
gactagtccatttatgcaaatagtgttttgattttagccatgaaagcatgcaagttgatatttgaagccagatttttcattgaactgaaaatatccttac |
319 |
Q |
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| T |
32187072 |
gactagtccatttatgcaaatagtgttttgattttagccatgaaagcatgcaagttgatatttgaagccagatttttcattgaactgaaaatatccttac |
32186973 |
T |
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| Q |
320 |
aagatttttgtaagttgttgtcatcatctaaaattttcgttgttatttcaacnnnnnnnattagtggttatagtaatcaactactatatttcacaaatga |
419 |
Q |
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| T |
32186972 |
aagatttttgtaagttgttgtcatcatctaaaattttcgttgttatttcatc-ttttttattagtggttatagtaatcaactactatatttcacaaatga |
32186874 |
T |
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| Q |
420 |
cgtgtttagggtgaagaagagtttcatatgatgtactagtggatcaatatttgaggataattggaaactcttaacaataattgatgtcactaatcataag |
519 |
Q |
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| T |
32186873 |
cgtgtttagggtgaagaagagtttcatatgatgtactagtggatcaatatttgaggataattggaaactc-taaaaataattgatgtcactaatcataag |
32186775 |
T |
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| Q |
520 |
tagcttatagtattcat |
536 |
Q |
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| T |
32186774 |
tagcttatagtattcat |
32186758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 32186412 - 32186322
Alignment:
| Q |
253 |
ttagccatgaaagcatgcaagttgatatttgaagccagatttttcattgaactgaaaatatccttacaagatttttgtaagttgttgtcat |
343 |
Q |
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|||| |||||||||||| |||||||||||| || ||||| ||| ||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
32186412 |
ttagtcatgaaagcatggaagttgatatttttagacagatatttatttgaacttaaaatatccttaaaagatctttgtaagttgttgtcat |
32186322 |
T |
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