View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_6 (Length: 467)
Name: NF21135_low_6
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 3923961 - 3923503
Alignment:
| Q |
1 |
gaaccttgctagaggggctatcatgttgtctatgtggtttggaacacaagcagatgaatattttcctcaagcatggtgttcagatacaacagagataact |
100 |
Q |
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| T |
3923961 |
gaaccttgctagaggggctatcatgttgtctatgtggtttggaacacaagcagatgaatattttcctcaagcatggtgttcagatacaacagagataact |
3923862 |
T |
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| Q |
101 |
gatgattctgtttgctatactcgttctaaggtatatatgtcaccttcccttaggtatgtaaaggtcactgtgattcaagcagacgatttgttactacaat |
200 |
Q |
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| T |
3923861 |
gatgattctgtttgctatactcgttctaaggtatatatgtcaccttcccttaggtatgtaaaggtcactgtgattcaagcacaccatttgttactacaat |
3923762 |
T |
|
| Q |
201 |
ttcctcctgagagttcggaattgtttgtccaagttggtttagggaagagtttttgtttgagaactagtttttctaaggaaaagagcgcgaaaccgttttg |
300 |
Q |
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| T |
3923761 |
ttcctcctgagagttcggaattgtttgtccaagttggtttagggaagagtttttgtttgagaactagtttttctaaggaaaagagcgcgaaaccgttttg |
3923662 |
T |
|
| Q |
301 |
gaatgaggatttgatgtttgttacacaagagcctttcgatgaagaacttgtcttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttg |
400 |
Q |
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| T |
3923661 |
gaatgaggatttgatgtttgttacacaagagcctttcgatgaagaacttgtcttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttg |
3923562 |
T |
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| Q |
401 |
ggtacatatacaactaatttgaataattcgaacgatgtggatttaagatttgatgatgt |
459 |
Q |
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| T |
3923561 |
ggtacatatacaactaatttgaataattcgaacgatgtggatataagatttgatgatgt |
3923503 |
T |
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