View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_8 (Length: 354)
Name: NF21135_low_8
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_8 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 55956074 - 55956427
Alignment:
| Q |
1 |
atttagattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956074 |
atttagattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaat |
55956173 |
T |
|
| Q |
101 |
tgattgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956174 |
tgattgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgt |
55956273 |
T |
|
| Q |
201 |
ctccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956274 |
ctccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcat |
55956373 |
T |
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| Q |
301 |
gtgtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956374 |
gtgtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaa |
55956427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 55959518 - 55959865
Alignment:
| Q |
1 |
atttagattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaat |
100 |
Q |
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|||||||||||| |||||| || ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||| |
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| T |
55959518 |
atttagatttttaaccaaacgccgctcttgaaacaaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaat |
55959617 |
T |
|
| Q |
101 |
tgattgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaa-----gaagctgtgatgtacatattttcctca |
195 |
Q |
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|||||||| ||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||| |||| | |||||||||||||||||||| |
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| T |
55959618 |
ggattgtataagcttttctacctcatcttctctaatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctca |
55959717 |
T |
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| Q |
196 |
tctgtctccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaag |
295 |
Q |
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| ||||||||||||||||||||||||||| | |||||| | ||||||||||| | |||||| |||||||| | ||||| |||||| |||||||||| ||| |
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| T |
55959718 |
tttgtctccaataatcaccgtatggagcaaagacaataccagttgaatcataggctaatatattaggagcaatgagttttggcctttgaacaaaagcaag |
55959817 |
T |
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| Q |
296 |
atcatgtgtcttcattatctctttggccaaatcaggagatgaaacaac |
343 |
Q |
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|||| ||||||||| |||||||||||| |||||||| ||||| ||||| |
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| T |
55959818 |
atcacgtgtcttcaatatctctttggctaaatcaggggatgagacaac |
55959865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 3 - 354
Target Start/End: Original strand, 12426403 - 12426757
Alignment:
| Q |
3 |
ttagattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtgg-tagtga----aagtgaaacttg |
97 |
Q |
| |
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||||||||||||||||| | ||| ||||||||||||| ||||||||||||| | | ||||||||| || |||||| | ||| ||| | || || |
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| T |
12426403 |
ttagattttttaccaaaagttgcccttgaaacaaaggaacttaccaaagaactaaccattttagtaagatcaagtggatcttgacaagaagaggaa--tg |
12426500 |
T |
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| Q |
98 |
aattgattgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatc |
197 |
Q |
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||| ||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
12426501 |
aatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatc |
12426600 |
T |
|
| Q |
198 |
tgtctccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagat |
297 |
Q |
| |
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||||||||||||||||| |||| |||| | | ||||||| |||| ||||||| |||||| || |||||||||| || ||||||||||||||||||||||| |
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| T |
12426601 |
tgtctccaataatcaccatatgaagcaaagataatatcttttgattcatatgttaatatatttggagctaggaattgtggcctctgaacaaaagaaagat |
12426700 |
T |
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| Q |
298 |
catgtgtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaa |
354 |
Q |
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|||||||||||||||||||||| | ||||| ||| |||||||||||||||| ||||| |
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| T |
12426701 |
catgtgtcttcattatctctttagtcaaattaggggatgaaacaaccactgtagaaa |
12426757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 103 - 354
Target Start/End: Complemental strand, 12266314 - 12266063
Alignment:
| Q |
103 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
202 |
Q |
| |
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||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
12266314 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12266215 |
T |
|
| Q |
203 |
ccaataatcaccgtatggag-cataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatg |
301 |
Q |
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|||||||||||| |||| || ||| | ||||||| |||| ||||| | || ||| || ||||| |||| | |||||||| ||| |||||||||||||| |
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| T |
12266214 |
ccaataatcaccatatgaagacat-gagaatatcttttgattcataggttattatattcggagcaaggaatcgtggcctctcaacgaaagaaagatcatg |
12266116 |
T |
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| Q |
302 |
tgtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaa |
354 |
Q |
| |
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|||| ||||||| ||||||| ||||| ||| |||||||||||||| ||||||| |
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| T |
12266115 |
tgtcctcattatttctttggtcaaattaggggatgaaacaaccacggcagaaa |
12266063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 12266417 - 12266367
Alignment:
| Q |
3 |
ttagattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaa |
53 |
Q |
| |
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||||||||||||||||| | ||| ||||||| ||||| ||||||||||||| |
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| T |
12266417 |
ttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaa |
12266367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 7140753 - 7140643
Alignment:
| Q |
126 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
225 |
Q |
| |
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|||||||||||| |||||||| | ||||||||||||||||| |||| || | | ||||||||| ||||| ||||||||||||||||| ||||||| | |
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| T |
7140753 |
tcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggagaaa |
7140654 |
T |
|
| Q |
226 |
aaacaatatct |
236 |
Q |
| |
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| ||||||||| |
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| T |
7140653 |
atacaatatct |
7140643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 7130335 - 7130269
Alignment:
| Q |
181 |
tacatattttcctcatctgtctccaataatcaccgtatggagcataaacaatatctgttgaatcata |
247 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||| | | |||||||| ||||| |||| |
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| T |
7130335 |
tacatatttttctcatttgtctccaataatcaccatatggagaaaatgcaatatcttttgaaccata |
7130269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 22858457 - 22858506
Alignment:
| Q |
294 |
agatcatgtgtcttcattatctctttggccaaatcaggagatgaaacaac |
343 |
Q |
| |
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||||||||||| |||||||||||||| |||| ||| ||||||||||||| |
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| T |
22858457 |
agatcatgtgttttcattatctcttttgccatatcttgagatgaaacaac |
22858506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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