View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_low_9 (Length: 345)
Name: NF21135_low_9
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 2841027 - 2841347
Alignment:
| Q |
20 |
tgaggtaaactcttcaatgtaccttacaaatatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaat |
119 |
Q |
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| T |
2841027 |
tgaggtaaactcttcaatgtaccttacaaatatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaat |
2841126 |
T |
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| Q |
120 |
gtatggtaaattggtaataatttgtgtttctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841127 |
gtatggtaaattggtaataatttgtgtttctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcat |
2841226 |
T |
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| Q |
220 |
aatgcttcttgaatgttaacccgtattcatgaaatttatctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841227 |
aatgcttcttgaatgttaacccgtattcatgaaatttatctatgtatgtcagcttcccaagactcctaaaagtgattaatagaattatttgtcagcgaaa |
2841326 |
T |
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| Q |
320 |
taagagtatagtattatctac |
340 |
Q |
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|||||||||||||||| |||| |
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| T |
2841327 |
taagagtatagtattagctac |
2841347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 2845714 - 2846034
Alignment:
| Q |
20 |
tgaggtaaactcttcaatgtaccttacaaatatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845714 |
tgaggtaaactcttcaatgtaccttacaaatatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaat |
2845813 |
T |
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| Q |
120 |
gtatggtaaattggtaataatttgtgtttctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcat |
219 |
Q |
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| T |
2845814 |
gtatggtaaattggtaataatttgtgtttctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcat |
2845913 |
T |
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| Q |
220 |
aatgcttcttgaatgttaacccgtattcatgaaatttatctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845914 |
aatgcttcttgaatgttaacccgtattcatgaaatttatctatgtatgtcagcttcccaagactcctaaaagtgattaatagaattatttgtcagcgaaa |
2846013 |
T |
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| Q |
320 |
taagagtatagtattatctac |
340 |
Q |
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|||||||||||||||| |||| |
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| T |
2846014 |
taagagtatagtattagctac |
2846034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 157 - 308
Target Start/End: Complemental strand, 2788323 - 2788172
Alignment:
| Q |
157 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaattt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2788323 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcacaatgcttcttgaatgttaacccgtattcatgaaattt |
2788224 |
T |
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| Q |
257 |
atctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatt |
308 |
Q |
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||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
2788223 |
ttctatgtatttcagctttctaagactcctgaaagtgattaatagaattatt |
2788172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 157 - 327
Target Start/End: Complemental strand, 7363863 - 7363694
Alignment:
| Q |
157 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaattt |
256 |
Q |
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|||||||||||| |||| | ||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
7363863 |
ttgataacaagttgaaatttttttgttctatcaccaagtagtttagtaatttcccttcttcacaatacttcttgaatgttaatccgtattcatgaaattt |
7363764 |
T |
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| Q |
257 |
atctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagta |
327 |
Q |
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| T |
7363763 |
atctatgtatttaagcttcctaagactcctgaaagtgatt-ataaaattatttgtcagcgaaataagagta |
7363694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 2832314 - 2832208
Alignment:
| Q |
53 |
ataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttcttt |
152 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2832314 |
ataatcgatacttgtttcattaatattgtttttattttgattcatcgttttctccagccaagagaatgtatggtaaattggtaataatttgtgtttcttt |
2832215 |
T |
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| Q |
153 |
gtctttg |
159 |
Q |
| |
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|||||| |
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| T |
2832214 |
ctctttg |
2832208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 2829578 - 2829526
Alignment:
| Q |
157 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttc |
209 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829578 |
ttgataacatgtcgaaaaatctttgttctatcaccacgtagtttggtaatttc |
2829526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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