View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21136_high_3 (Length: 493)

Name: NF21136_high_3
Description: NF21136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21136_high_3
NF21136_high_3
[»] chr6 (15 HSPs)
chr6 (173-479)||(896891-897197)
chr6 (1-247)||(1182389-1182636)
chr6 (8-207)||(1237134-1237332)
chr6 (8-129)||(897197-897319)
chr6 (266-408)||(1193133-1193275)
chr6 (73-204)||(1193411-1193542)
chr6 (264-384)||(1182207-1182330)
chr6 (265-366)||(1237479-1237580)
chr6 (183-245)||(896558-896621)
chr6 (264-341)||(793878-793956)
chr6 (418-473)||(1182090-1182145)
chr6 (418-478)||(1193013-1193073)
chr6 (301-355)||(1176683-1176737)
chr6 (59-98)||(1183394-1183433)
chr6 (203-248)||(1237368-1237414)
[»] chr4 (4 HSPs)
chr4 (266-371)||(10203758-10203863)
chr4 (73-137)||(12857196-12857260)
chr4 (418-475)||(10203490-10203547)
chr4 (53-104)||(12857477-12857529)
[»] scaffold0302 (1 HSPs)
scaffold0302 (73-137)||(19733-19797)
[»] chr7 (1 HSPs)
chr7 (86-137)||(20257183-20257234)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 173 - 479
Target Start/End: Complemental strand, 897197 - 896891
Alignment:
Q  173 atcaaggactccattatctgatccaaaaccccatttgtactcaatatgcaataacatatcctaagtattcaatatgctcactagagagcacttatcacat 272  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897197 atcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataacatatcctaagtattcaatatgctcactagagagcacttatcacat 897098  T
Q  273 tttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgttttttataag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897097 tttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgttttttataag 896998  T
Q  373 tgttggaacaaaatacttgtgagttagaacaaaatatctattgtcatatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttga 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  896997 tgttggaacaaaatacttgtgagttagaacaaaatatctattgtcatatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtgtga 896898  T
Q  473 tcttcat 479  Q
    |||||||    
T  896897 tcttcat 896891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1182636 - 1182389
Alignment:
Q  1 attggcaatgacaacttctgataaatcctattccctctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182636 attggcaatgacaacttctgataaatcctattccccctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaac 1182537  T
Q  101 actaacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatatcaaggactccattatctgatccaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182536 actaacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatatcaaggactccattatctgatccaaaa 1182437  T
Q  201 ccccatttgtactcaatatgcaataac-atatcctaagtattcaatat 247  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1182436 ccccatttgtactcaatatgcaataacaatatcctaagtattcaatat 1182389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 1237134 - 1237332
Alignment:
Q  8 atgacaacttctgataaatcctattccctctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaacactaaca 107  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||| ||||| ||    
T  1237134 atgacaacttctgataaatcctatcccc-ctcttacgaaaacgctccaaaagattgaaagaaaaacactcatcacctaataaaacaccagagcactacca 1237232  T
Q  108 ataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatatcaaggactccattatctgatccaaaaccccatt 207  Q
    ||| |||||||||||| |||||||||||| ||||||||||| |||||||  | ||||| | |||||||||||||||||| ||||||||||||||||||||    
T  1237233 ataacaaatcttaggcataaaaacactcaccacctagtaattctaacatagctacctatagggatatcaaggactccatcatctgatccaaaaccccatt 1237332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 897319 - 897197
Alignment:
Q  8 atgacaacttctgataaatcctattccctc-tcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaacactaac 106  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  897319 atgacaacttctgataaatcctattcccccctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactacc 897220  T
Q  107 aataccaaatcttaggcctaaaa 129  Q
    |||| ||||||||||||||||||    
T  897219 aataacaaatcttaggcctaaaa 897197  T

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Target: chr6; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 1193275 - 1193133
Alignment:
Q  266 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgtttt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||| || |||||| |||||||||||| ||||||  |    
T  1193275 atcacattttcttaaccacatactcattagagagcaagtaaaaaaattcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtaat 1193176  T
Q  366 ttataagtgttggaacaaaatacttgtgagttagaacaaaata 408  Q
    |||||||||||||||||||||||||| || || ||||||||||    
T  1193175 ttataagtgttggaacaaaatacttgggacttggaacaaaata 1193133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 1193542 - 1193411
Alignment:
Q  73 cactcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggat 172  Q
    ||||||| ||||||||||||||||||| |||| | ||| ||||||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||||    
T  1193542 cactcatcacctaataacacaccagaatactacctataacaaatcttaggcctaaaaacattcataacctagtaatactaacataactacctataaggat 1193443  T
Q  173 atcaaggactccattatctgatccaaaacccc 204  Q
    ||||| |||||||| |||||||||||||||||    
T  1193442 atcaatgactccatcatctgatccaaaacccc 1193411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 1182330 - 1182207
Alignment:
Q  264 ttatcacattttcttaaccacatactcattag---agagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatact 360  Q
    |||||||||||||||||||||||| |||||||   ||||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||| |||     
T  1182330 ttatcacattttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatccacaatacaataaagaaggcacagtacg 1182231  T
Q  361 gttttttataagtgttggaacaaa 384  Q
    || |||||||||||||||||||||    
T  1182230 gtattttataagtgttggaacaaa 1182207  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 1237479 - 1237580
Alignment:
Q  265 tatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgttt 364  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||| ||||||||| || ||| ||||    
T  1237479 tatcacattttcttaaccacatactcattagagtgcaagtaaaataattcttagaaaccatatacatccacaatgcaataaagaaggcgcagtacagttt 1237578  T
Q  365 tt 366  Q
    ||    
T  1237579 tt 1237580  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 896621 - 896558
Alignment:
Q  183 ccattatctgatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat 245  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  896621 ccatcatctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaat 896558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 793878 - 793956
Alignment:
Q  264 ttatcacattttcttaaccacatactcattagagagcaagtaaaaaa-tttctaagaaaccatatacatccacaatgca 341  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||  |||| |||||||||||||| ||||||||||    
T  793878 ttatcacattttcttaaccacatattcattaaaaagcaagtaaaaaagattcttagaaaccatatacaaccacaatgca 793956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 1182145 - 1182090
Alignment:
Q  418 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgat 473  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  1182145 atatcaaacttctaaacaacattaaaattctagcctgaaggtaatatttgtttgat 1182090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 1193073 - 1193013
Alignment:
Q  418 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgatcttca 478  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||| ||||    
T  1193073 atatcaaacttctaaacaacattaaaattctagcctgaaggtaatatttgttcgatgttca 1193013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 1176737 - 1176683
Alignment:
Q  301 aagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcaca 355  Q
    |||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||    
T  1176737 aagtaaaaaaattcttagaaaccatatacaaccacaatgcaataaagaaggcaca 1176683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 1183433 - 1183394
Alignment:
Q  59 aattgaaagaaaaacactcattacctaataacacaccaga 98  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  1183433 aattgaaagaaaaacacttatcacctaataacacaccaga 1183394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 1237368 - 1237414
Alignment:
Q  203 ccatttgtactcaatatgcaataac-atatcctaagtattcaatatg 248  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||    
T  1237368 ccatttgaactcaatatgcaataacaatatcctaagtactcaatatg 1237414  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 10203863 - 10203758
Alignment:
Q  266 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgtttt 365  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||| ||||| |||| || ||| || |||||||||||| | |||| ||    
T  10203863 atcacatttttttaaccacatactcattagagagcaagtaaacaaattcttagaaatcatattcatctacgatgaaaaaaagaaggcacattcctgtatt 10203764  T
Q  366 ttataa 371  Q
    ||||||    
T  10203763 ttataa 10203758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 12857260 - 12857196
Alignment:
Q  73 cactcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcat 137  Q
    ||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||    
T  12857260 cactcatcacctaataacacaccagaacactacctataacaaatcttaggcctaaaaacattcat 12857196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 10203547 - 10203490
Alignment:
Q  418 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgatct 475  Q
    |||| |||||||||||||  ||||| |||||||  |||||||||||||||||||||||    
T  10203547 atattaaacttctaaacaaaattaaaattctagcttgaaggtaatatttgtttgatct 10203490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 12857529 - 12857477
Alignment:
Q  53 ccaaacaattgaaagaaaa-acactcattacctaataacacaccagaacacta 104  Q
    ||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||    
T  12857529 ccaaacaattgaaagaaaagacactcataacctaagaacacacaagatcacta 12857477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 19797 - 19733
Alignment:
Q  73 cactcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcat 137  Q
    ||||||| |||||||||||||||||||||||| | ||| ||||||||||| ||||||||| ||||    
T  19797 cactcatcacctaataacacaccagaacactacctataacaaatcttaggtctaaaaacattcat 19733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 20257183 - 20257234
Alignment:
Q  86 ataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcat 137  Q
    ||||||||| ||||||||| | ||| ||||||||||||||||||||| ||||    
T  20257183 ataacacactagaacactacctataacaaatcttaggcctaaaaacattcat 20257234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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