View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21136_low_1 (Length: 609)
Name: NF21136_low_1
Description: NF21136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21136_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 272 - 601
Target Start/End: Complemental strand, 37097992 - 37097662
Alignment:
| Q |
272 |
caaaagtaataatatcaggtgagaatagctgaaaccttttttctctatcttattctttcatgaa-tagtnnnnnnnngttctagtttaattaaccagctt |
370 |
Q |
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| T |
37097992 |
caaaagtaataatatcaggtgagaatagctgaaaccttttttctctatcttattctttcatgaaatagtaaaaaaaagttctagtttaattaaccagctt |
37097893 |
T |
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| Q |
371 |
cggaaaagaaaatgcattagttttttatttaaaaatatagcaattgaaaaaatattactgttgaagttgttttaagtaaccaaattaagcacatccttct |
470 |
Q |
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| T |
37097892 |
cggaaaagaaaatgcattagttttttatttaaaaatatagcaattgaaaaaatatgactgttgaagttgttttaagtaaccaaattaagcacatccttct |
37097793 |
T |
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| Q |
471 |
tttctctaaaatgggtaactaccattttgcacttgaggtgcactactagttataactggtccccatctatatattgcactttgttcctcaacaataatgt |
570 |
Q |
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| T |
37097792 |
tttctctaaaatgggtaactaccattttgcacttgaggtgcactactagttataactggtccccatctatatattgcactttgttcctcaacaataatgt |
37097693 |
T |
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| Q |
571 |
tacactcatatttattatcttcatctcactc |
601 |
Q |
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| T |
37097692 |
tacactcatatttattatcttcatgtcactc |
37097662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 447 - 601
Target Start/End: Complemental strand, 37091484 - 37091330
Alignment:
| Q |
447 |
taaccaaattaagcacatccttcttttctctaaaatgggtaactaccattttgcacttgaggtgcactactagttataactggtccccatctatatattg |
546 |
Q |
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| T |
37091484 |
taaccaaattaagcccatccttcttttctctaaaataggtagctaccattttgcacttgaggtgcactactagttataactggtccccatctatatattg |
37091385 |
T |
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| Q |
547 |
cactttgttcctcaacaataatgttacactcatatttattatcttcatctcactc |
601 |
Q |
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| T |
37091384 |
cactttgttcctcaacaataatgttacactcatatttattatcttcatatcactc |
37091330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 37098224 - 37098123
Alignment:
| Q |
30 |
tcttttgtttattgtttctgatttgggtttttacaagtgcactttgtccaatttcttgcaagtggttacccttggtgtaaaatttaattgattttttctc |
129 |
Q |
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| T |
37098224 |
tcttttgtttattgtttctgatttgggtttttacaagtgcactttgtccaatttcttgcaagtggttacccttggtgtaaaatttaattgattttttctc |
37098125 |
T |
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| Q |
130 |
tg |
131 |
Q |
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|| |
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| T |
37098124 |
tg |
37098123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 37098108 - 37098038
Alignment:
| Q |
156 |
ttcacacacccagaaagggttcttatatatattatacccatgtattttggtatggttgatttgattttgca |
226 |
Q |
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| T |
37098108 |
ttcagacacccagaaagggttcttatatgtattatacccatgtattttggtatggttgatttgattttgca |
37098038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 37091910 - 37091827
Alignment:
| Q |
48 |
tgatttgggtttttacaagtgcac-tttgtccaatttcttgcaagtggtta-cccttggtgtaaaatttaattgattttttctc |
129 |
Q |
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| T |
37091910 |
tgatttgggtttttacaattgcacttttgtccaatcttttgcaagtggttaccccttggtgtcaaatttaattaattttttctc |
37091827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 37091776 - 37091743
Alignment:
| Q |
193 |
ccatgtattttggtatggttgatttgattttgca |
226 |
Q |
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| T |
37091776 |
ccatgtattttggtatggttgatttgattgtgca |
37091743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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