View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21136_low_2 (Length: 537)
Name: NF21136_low_2
Description: NF21136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21136_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 56 - 517
Target Start/End: Complemental strand, 49674392 - 49673930
Alignment:
| Q |
56 |
acttgagactaaattatgtattttgaccccgacagcagctgcacggtgcagcagctgaaggggatccatttccttaaattactatacaaggatggaaatt |
155 |
Q |
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| T |
49674392 |
acttgagactaaattatgtattttgaccccgacagcagctgcacggtgcagcagctgaaggggatccatttccttaaattactatacaaggatggaaatt |
49674293 |
T |
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| Q |
156 |
tcaaatttctattctactgtatataatacagtctagtaactgatacttaggattgaacactgttgggtgccaaaattttagtatacgtccaacgaaaaag |
255 |
Q |
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| T |
49674292 |
tcaaatttctattctactgtatataatacagtctagtaactgatacttaggattgaacactgttgggtgccaaaattttagtatacgtccaacgaaaaag |
49674193 |
T |
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| Q |
256 |
tctaagaagttggattttctggtaacctt-ttttaacgacctttgttgtgtaacctttggttgaggtctatttaatgcccttcactcaggacaacctccc |
354 |
Q |
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| T |
49674192 |
tcttagaagttggattttctggtaacctttttttaacaacctttgttgtgtaacctttggttgaggtctatttaatgcccttcaatcaggacaacctccc |
49674093 |
T |
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| Q |
355 |
ctctcttaaactctttttaacaatgtgcatgtattgtgaaagcataccttcggcacagtggaattttccttgaatattaagtcggcatcgtcccccttga |
454 |
Q |
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| T |
49674092 |
ctctcttaaactctttttaacaatgcgcatgtattgtgaaagcataccttcggcacagtggaattttccttgaatatcaagtcggcatcgtcccccttga |
49673993 |
T |
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| Q |
455 |
tgatgaagacactggttacaatcatcagataattgtactacaatggagatctgaggagataga |
517 |
Q |
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| T |
49673992 |
tgatgaagacactggttacaatcatcagataattgtactacaatggagatctgaggagataga |
49673930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 396 - 517
Target Start/End: Complemental strand, 49723956 - 49723835
Alignment:
| Q |
396 |
gcataccttcggcacagtggaattttccttgaatattaagtcggcatcgtcccccttgatgatgaagacactggttacaatcatcagataattgtactac |
495 |
Q |
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| T |
49723956 |
gcataccttcggcacagtggaattttccttgaatatcaagtcggcatcgtcccccttgatgatgaagacactggttacaatcatcagataattgtactac |
49723857 |
T |
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| Q |
496 |
aatggagatctgaggagataga |
517 |
Q |
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| T |
49723856 |
aatggagatctgaggagataga |
49723835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 49674475 - 49674391
Alignment:
| Q |
15 |
caaaggtaccgattaaattgaaaacaagcaataaagtgaagacttgagactaaattatgtattttgaccccgacagcagctgcac |
99 |
Q |
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| T |
49674475 |
caaaggtaccgattaaattgaaaacaagcaataaagtgaagacttgagactaaattatgtattttgaccccgacagcagctgcac |
49674391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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