View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21136_low_4 (Length: 487)

Name: NF21136_low_4
Description: NF21136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21136_low_4
NF21136_low_4
[»] chr4 (13 HSPs)
chr4 (1-462)||(36399658-36400120)
chr4 (1-395)||(36370520-36370922)
chr4 (1-462)||(36407115-36407575)
chr4 (1-462)||(36435723-36436185)
chr4 (1-388)||(36412312-36412698)
chr4 (1-462)||(36376225-36376687)
chr4 (1-462)||(36389469-36389923)
chr4 (231-462)||(36429270-36429502)
chr4 (228-462)||(36419277-36419512)
chr4 (1-215)||(36401201-36401414)
chr4 (1-170)||(36429554-36429723)
chr4 (1-198)||(36419564-36419760)
chr4 (404-465)||(36370430-36370491)
[»] chr8 (8 HSPs)
chr8 (299-363)||(15697356-15697420)
chr8 (299-368)||(15692680-15692749)
chr8 (299-360)||(15799863-15799924)
chr8 (299-360)||(15805395-15805456)
chr8 (299-357)||(15764414-15764472)
chr8 (299-360)||(15813245-15813306)
chr8 (92-153)||(19357642-19357703)
chr8 (299-363)||(15703735-15703799)
[»] chr2 (2 HSPs)
chr2 (278-385)||(2662470-2662577)
chr2 (120-153)||(2672709-2672742)
[»] scaffold0090 (1 HSPs)
scaffold0090 (284-321)||(8284-8321)
[»] chr1 (1 HSPs)
chr1 (284-321)||(47607375-47607412)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 36400120 - 36399658
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| || ||||||||   |||||||| ||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  36400120 tccaattaaatttggggagtctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagat 36400021  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcataaaaa-tacatatccatctg 199  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  36400020 tttgttgaatatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggtta-gagtatcataaaaaatacatatccatctg 36399922  T
Q  200 tataatttcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||    
T  36399921 tataatttcgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccg 36399822  T
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattat 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  36399821 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatata 36399722  T
Q  399 aaacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 462  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  36399721 aaacacctcgagcaatgccacaaataatttcaaaacgcttaccccaatccaatgatgacctttg 36399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 36370922 - 36370520
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370922 tccaattaaatttggtgattctcttcctgtttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 36370823  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattataca-------aaattgttaagagtatcataaaaatacatatc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||       ||||||||||||||||||||||||||||||||    
T  36370822 tttgttgaatatcgtccttccattgcatattctggtgacatatattcactgcaattatacattatacaaaattgttaagagtatcataaaaatacatatc 36370723  T
Q  194 catctgtataatttcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagcc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  36370722 catctgtataatttcgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagcc 36370623  T
Q  293 atgccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaa 392  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370622 ataccaaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaa 36370523  T
Q  393 gat 395  Q
    |||    
T  36370522 gat 36370520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 36407575 - 36407115
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| || ||||||||   |||||||| ||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  36407575 tccaattaaatttggggagtctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagat 36407476  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcataaaaatacatatccatctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  36407475 tttgttgaatatcgtccttccattgcatattctggtgacatatatccactgcaattaaacaaaatggtta-gagtatcataaaaatacatatccatctgt 36407377  T
Q  201 ataatttcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccga 299  Q
    ||| ||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || |    
T  36407376 atattttcgtgat-ataagtgtgtgacacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaa 36407278  T
Q  300 aatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattata 399  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  36407277 aatctgagattttgggattcattgcagcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataa 36407178  T
Q  400 aacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 462  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||    
T  36407177 aacacctcgagcaatcccacaaatgatttcaaaacgctttacccaatccaatgatgacctttg 36407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 36436185 - 36435723
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||  |||||| ||||||||||||| |||    
T  36436185 tccaattaaatttggggagtctcttcctgtttcacaatgtgtgtttctttggccagcaataatctccagtagtaaaacaccaaaactgaagacatccgat 36436086  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcata-aaaatacatatccatctg 199  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||  | ||||| |||||||| || |||||     
T  36436085 ttagttgaatatcgtccttccattgcatattccggtgacatatatccactgcaattatacaaaatagttaag--tctcatacaaaatacagattcatctc 36435988  T
Q  200 tataat-ttcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgcc 297  Q
    |||||| ||  || ||||||| || ||| |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||    
T  36435987 tataatcttaatggttataagggtatgaaacatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccatacc 36435888  T
Q  298 gaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatta 397  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  36435887 aaaatctgagattttgggattcattgcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatat 36435788  T
Q  398 taaacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 462  Q
     ||||||||||||||||  ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  36435787 aaaacacctcgagcaatgccacaaataatttcaaaacgcttaccccaatccaataatgacctttg 36435723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 36412698 - 36412312
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| || ||||||||   |||||||| ||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  36412698 tccaattaaatttggggagtctcttccaatttcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagat 36412599  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcataaaaatacatatccatctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  36412598 tttgttgaatatcgtccttccattgcatattctggtgacatatatccactgcaattaaacaaaatggtt-agagtatcataaaaatacatatccatctgt 36412500  T
Q  201 ataatttcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccga 299  Q
    ||| |||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || |    
T  36412499 atattttcgtga-tataagtgtgtgacacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaa 36412401  T
Q  300 aatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgg 388  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412400 aatctgagattttgggattcattgcagcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgg 36412312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 36376687 - 36376225
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| || |||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||  |||||| ||||||||||||| |||    
T  36376687 tccaattaaatttggggagtctcttcctgtttcacaatgtgtgtttctttggccggcaataatctccagtagtaaaacaccaaaactgaagacatccgat 36376588  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcata-aaaatacatatccatctg 199  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||  | ||||| |||||||| || |||||     
T  36376587 ttagttgaatatcgtccttccattgcatattccggtgacatatatccactgcaattatacaaaatagttaag--tctcatacaaaatacagattcatctc 36376490  T
Q  200 tataat-ttcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgcc 297  Q
    |||||| ||  || ||||||| || ||| |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||    
T  36376489 tataatcttaatggttataagggtgtgaaacatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccatacc 36376390  T
Q  298 gaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatta 397  Q
     |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  36376389 aaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatat 36376290  T
Q  398 taaacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 462  Q
     ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  36376289 aaaacacctcgagcaatcccacaaataatttcaaaacgctttccccaatccaatgatgacctttg 36376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 36389923 - 36389469
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||  | ||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36389923 tccaattaaattcagggatgctcttcctgtttcagaatgtgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 36389824  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgtta-agagtatcataaaaatacatatccatctg 199  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||  ||||||||| ||| |||  | |           |||||     
T  36389823 tttgttgaatatcgtccttccattgcatattccggtgacatgtatccactgcaattataggaaattgttagagaatatggtga-----------catcta 36389735  T
Q  200 tataatt-tcgtgattataagtgtttgagacatactatgttccgaccactctttctgttcttgcttggatttca----cttctccaaatattctagccat 294  Q
    ||||||  | |||| |||||| || |||||||||||||||||| |||||||||| |||| ||||||||||||||    | ||||||||||||||||||||    
T  36389734 tataatcatggtgaatataagggtatgagacatactatgttccaaccactctttttgttattgcttggatttcatcatcgtctccaaatattctagccat 36389635  T
Q  295 gccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaaga 394  Q
     || |||||||||||||| || |||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  36389634 accaaaatctgagattttagggttcattgcagcgtcaaggagaacattgctggcttttaggtctctatgaatgattttcagccttgaatcttgatgaaga 36389535  T
Q  395 ttataaacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 462  Q
    |   |||| |||||||||||| |||  |||||||||||||| ||  ||||||||||||||||||||||    
T  36389534 tataaaacgcctcgagcaatcccac--ataatttcaaaacgtttgccccaatccaatgatgacctttg 36389469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 231 - 462
Target Start/End: Complemental strand, 36429502 - 36429270
Alignment:
Q  231 tactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcat 329  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  36429502 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcat 36429403  T
Q  330 caaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttc 429  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||| |||||||||||||    
T  36429402 cgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttc 36429303  T
Q  430 aaaacgcttaacccaatccaatgatgacctttg 462  Q
    ||||||||| |||||||||||||| ||||||||    
T  36429302 aaaacgctttacccaatccaatgacgacctttg 36429270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 228 - 462
Target Start/End: Complemental strand, 36419512 - 36419277
Alignment:
Q  228 acatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcag 326  Q
    |||||||||||||| || ||||||| |||||| ||||| |||||| |||||||||||||||||||||| || ||||| |||||||||||||||||| |||    
T  36419512 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatccgagattttgggattcattacag 36419413  T
Q  327 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataa-acacctcgagcaatcacacaaataa 425  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||    
T  36419412 catcaaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagat-ataatacacctcgagcaatcccacaaataa 36419314  T
Q  426 tttcaaaacgcttaacccaatccaatgatgacctttg 462  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36419313 tttcaaaacgcgtaacccaatccaatgatgacctttg 36419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36401414 - 36401201
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| ||  ||||||||| |||||||| |||||||||||| ||||||||||||||||| |||| ||| |||||||| ||||||||||||    
T  36401414 tccaattaaatttggggaagctcttcctgtttcacaatgtgtgtttctttgaccagcaataatctctagcagtaagaccccataactaaagacatcagat 36401315  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcataaaaatacatatccatctgt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  36401314 ttcgttgaatatcgtccttccattgcatattctggtgacatatatccactgcaattaaacaaaatggtt-agagtatcataaaaatacatatccatctgt 36401216  T
Q  201 ataatttcgtgatta 215  Q
    ||| |||||| ||||    
T  36401215 atattttcgtaatta 36401201  T

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Target: chr4; HSP #11
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36429723 - 36429554
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  36429723 tccaattaaatttggggattctcttcctttttcacaatgtgtgtttctttggccagcaatagtctccagtagtatgaccccataactgaagacatcagat 36429624  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgtta 170  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  36429623 ttcgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattattcaaaatagtta 36429554  T

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Target: chr4; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 36419760 - 36419564
Alignment:
Q  1 tccaattaaatttggtgattctcttcctgcttcacaatatgtgtttctttggccagcaataatctctagtagtatgacaccataactgaagacatcagat 100  Q
    ||||||||||||||| || ||||||||||  ||||||| ||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  36419760 tccaattaaatttggggagtctcttcctgtctcacaatgtgtgtttctcttgccagcaataatctccagtagtaagaccccataactgaagacatcagat 36419661  T
Q  101 tttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgcaattatacaaaattgttaagagtatcataaaaatacatatccatct 198  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| | | | || |||||||||||||| ||| ||||    
T  36419660 tttgttgaatatcgtccttgcattgcatattccggagacatatatccactgcaattatacaaaatagct-atagcatcataaaaatacagatcaatct 36419564  T

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Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 36370491 - 36370430
Alignment:
Q  404 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttgatt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370491 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttgatt 36370430  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 15697356 - 15697420
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatg 363  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  15697356 aaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatg 15697420  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 15692680 - 15692749
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaatta 368  Q
    |||||||| ||||||||||||||||||  ||| |  ||||||||||| ||||| ||||||||||||||||    
T  15692680 aaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaatta 15692749  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 15799863 - 15799924
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 360  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15799863 aaatctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctct 15799924  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 15805395 - 15805456
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 360  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15805395 aaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctct 15805456  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 15764414 - 15764472
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatc 357  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||| ||||| |||||    
T  15764414 aaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcagatc 15764472  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 15813245 - 15813306
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 360  Q
    ||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  15813245 aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 15813306  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 19357703 - 19357642
Alignment:
Q  92 acatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccgctgca 153  Q
    |||||||| ||||||||| |   ||||||||||||||||||||| ||||| ||||| |||||    
T  19357703 acatcagactttgttgaacaaattccttccattgcatattctggagacatgtatccactgca 19357642  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 15703735 - 15703799
Alignment:
Q  299 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatg 363  Q
    |||||||| ||||| |||||||||||| |||| || ||||| |||| |||||| || ||||||||    
T  15703735 aaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatg 15703799  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 385
Target Start/End: Original strand, 2662470 - 2662577
Alignment:
Q  278 ccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagcc 377  Q
    ||||| ||||| ||||| || || || || ||||| |||||||||||  |||| |  ||||||||||| |||||||||||||||||||||||| | || |    
T  2662470 ccaaacattcttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtc 2662569  T
Q  378 ttgaatct 385  Q
    ||||||||    
T  2662570 ttgaatct 2662577  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 2672742 - 2672709
Alignment:
Q  120 ccattgcatattctggtgacatatatccgctgca 153  Q
    |||||||||||||||| |||||||||||||||||    
T  2672742 ccattgcatattctggagacatatatccgctgca 2672709  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 8284 - 8321
Alignment:
Q  284 attctagccatgccgaaatctgagattttgggattcat 321  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  8284 attctagccatgccaaaatctgaaattttgggattcat 8321  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 47607412 - 47607375
Alignment:
Q  284 attctagccatgccgaaatctgagattttgggattcat 321  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  47607412 attctagccatgccaaaatctgagattttaggattcat 47607375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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