View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21136_low_8 (Length: 249)
Name: NF21136_low_8
Description: NF21136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21136_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 12989907 - 12990028
Alignment:
| Q |
128 |
gctgaacatgatgaatctgtacagtcaaaagttaaattgaccaaaaagatggcaaggnnnnnnnnggaacaagtttatctgctggttctcaacagtttgc |
227 |
Q |
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| T |
12989907 |
gctgaacatgatgaatctgtacagtcaaaagttaaattgaccaaaaagatggcaaggaaaaaaaaggaacaagtttatctgctggttctcaccagtttga |
12990006 |
T |
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| Q |
228 |
atgagtacacacttccatttct |
249 |
Q |
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| T |
12990007 |
atgagtacacacttccatttct |
12990028 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12989779 - 12989859
Alignment:
| Q |
1 |
ttaatttagaaacagagagacttgattagataaataaaaactagagagaccaatattgaatatagttcaaattagagagag |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12989779 |
ttaatttagaaacagagagacttgattagataaataaaaactagagagaccaatattgaatatagttcaaattagagagag |
12989859 |
T |
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