View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21137_high_5 (Length: 306)

Name: NF21137_high_5
Description: NF21137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21137_high_5
NF21137_high_5
[»] chr5 (14 HSPs)
chr5 (20-215)||(9074799-9074994)
chr5 (20-215)||(8535333-8535528)
chr5 (20-216)||(8528777-8528973)
chr5 (20-215)||(8677637-8677832)
chr5 (127-215)||(8548277-8548365)
chr5 (130-213)||(8636701-8636784)
chr5 (65-215)||(1600404-1600554)
chr5 (130-215)||(8644044-8644129)
chr5 (127-179)||(8641242-8641294)
chr5 (79-166)||(9003351-9003438)
chr5 (139-185)||(2845222-2845268)
chr5 (139-185)||(2857043-2857089)
chr5 (138-185)||(2905141-2905188)
chr5 (139-185)||(2874653-2874699)
[»] chr7 (2 HSPs)
chr7 (23-188)||(35779696-35779861)
chr7 (122-215)||(48362030-48362128)
[»] scaffold0627 (1 HSPs)
scaffold0627 (122-215)||(4492-4585)
[»] chr6 (1 HSPs)
chr6 (120-215)||(16716179-16716274)
[»] chr4 (1 HSPs)
chr4 (20-216)||(9442938-9443134)
[»] chr1 (1 HSPs)
chr1 (127-215)||(5130638-5130726)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 9074799 - 9074994
Alignment:
Q  20 tgctgccatattgtcatatcattcatccaaatgttttatattttttgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaag 119  Q
    |||||||||||||| ||||||||  | ||| |||||||| || | |||||||| ||| ||||||||||||||||||||||| ||||||| ||| ||||||    
T  9074799 tgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaaag 9074898  T
Q  120 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||||| ||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||  | ||||| ||||||||||||||||||    
T  9074899 ttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaa 9074994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 8535528 - 8535333
Alignment:
Q  20 tgctgccatattgtcatatcattcatccaaatgttttatattttttgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaag 119  Q
    |||||||||||||| ||||||||| | ||| |||||||| |  | |||||||| ||| ||||||||| |||||||||||||  | |||| |   |||||     
T  8535528 tgctgccatattgttatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaaat 8535429  T
Q  120 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||||| ||||||| || || |||||||||||||| ||||||||||||||  ||||||| ||||||||| | || || ||||||||||||||||||    
T  8535428 ttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 8528973 - 8528777
Alignment:
Q  20 tgctgccatattgtcatatcattcatccaaatgttttatattttttgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaag 119  Q
    |||||||||||||||||||||||| ||||| |||||||  |  |  |||||||  || ||||| ||||||||||||||||| ||||||| ||    |||     
T  8528973 tgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaat 8528874  T
Q  120 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaaa 216  Q
    | |||| ||||||| || || |||||||||||||| ||||||||||||||  ||||||||| ||||||| | || || |||||||||||||||||||    
T  8528873 tattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaa 8528777  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 8677832 - 8677637
Alignment:
Q  20 tgctgccatattgtcatatcattcatccaaatgttttatattttttgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaag 119  Q
    |||||||||||||| ||||||||| | ||| ||| |||| |  | |||||| | |||  |||| ||||||||||||||||| || || | |   ||  |     
T  8677832 tgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaagtttttcgaattcacggcacttcttccgaa 8677733  T
Q  120 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    ||| || || ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||    
T  8677732 tttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 8548277 - 8548365
Alignment:
Q  127 aagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||    
T  8548277 aagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 8636784 - 8636701
Alignment:
Q  130 taattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggt 213  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||    
T  8636784 taattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 1600404 - 1600554
Alignment:
Q  65 tgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaag 164  Q
    |||||||| ||| ||| ||| ||||| ||||  ||| ||||||| ||  ||| | | |||| || |||| || ||||||||||||||||| |||||||||    
T  1600404 tgaacctgcgaaatatcgatgcaaagcttttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaag 1600503  T
Q  165 gatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||||| ||||||| ||||||||| | ||||| ||||||||||||||||||    
T  1600504 gatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaa 1600554  T

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Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 8644129 - 8644044
Alignment:
Q  130 taattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| | |  |||| ||||||||||||||||||    
T  8644129 taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

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Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 8641294 - 8641242
Alignment:
Q  127 aagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaagga 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8641294 aagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 9003438 - 9003351
Alignment:
Q  79 atggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaagga 166  Q
    ||||||||| |||||||| | | || |||  ||||||||| ||  || |||||||||| |||||||||||||||||||||||||||||    
T  9003438 atggattcagagtttttcaagttcacggggctcaatcaaaattagttgaagtaattccacatattccaagtctaatctcattgaagga 9003351  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 2845222 - 2845268
Alignment:
Q  139 atattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 185  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  2845222 atattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2845268  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 2857043 - 2857089
Alignment:
Q  139 atattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 185  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  2857043 atattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2857089  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 2905141 - 2905188
Alignment:
Q  138 catattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 185  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  2905141 catattccaagtctaatatcattgaaagatgtcgtgaatggagacaat 2905188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 2874653 - 2874699
Alignment:
Q  139 atattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 185  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  2874653 atattcaaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2874699  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 35779861 - 35779696
Alignment:
Q  23 tgccatattgtcatatcattcatccaaatgttttatattttttgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaagttt 122  Q
    ||||||||||| ||||||||||| ||| |||||||| |  |||||||||| ||| ||||||| ||||||||||||||| | ||||| ||  ||||| | |    
T  35779861 tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatct 35779762  T
Q  123 tttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatt 188  Q
     || |||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  35779761 gttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatatt 35779696  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 48362030 - 48362128
Alignment:
Q  122 ttttcaagtaattcctcatattccaagtctaatct-----cattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||| ||||||| || ||||||||||||||||| |     |||||||||||||| |||||||||| |||||  | ||| | ||| ||||||||||||||    
T  48362030 ttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaa 48362128  T

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Target: scaffold0627 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 4585 - 4492
Alignment:
Q  122 ttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||||||||    
T  4585 ttttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 16716274 - 16716179
Alignment:
Q  120 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| | ||| | ||||||||||||||||||    
T  16716274 ttttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa 16716179  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 9443134 - 9442938
Alignment:
Q  20 tgctgccatattgtcatatcattcatccaaatgttttatattttttgaacctgggaagtatggattcaaagtttttcgaatccatgggattcaatcaaag 119  Q
    |||||||||||||||||||||||| | ||| |||||||  |  |  |||||||  || ||||| ||||||||||||||||| ||||||| ||    |||     
T  9443134 tgctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggaaaaat 9443035  T
Q  120 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaaa 216  Q
    | |||| ||||||| |  || |||||||||||||| ||||||||||||||  ||||||||| ||||||| | || || |||||||||||||||||||    
T  9443034 tattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaa 9442938  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 5130726 - 5130638
Alignment:
Q  127 aagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 215  Q
    |||||||||| |||||| |||||||||| ||| | |||||| | |||||||||||||||||| | ||||| ||||| ||||||||||||    
T  5130726 aagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaa 5130638  T

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