View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21137_low_1 (Length: 722)

Name: NF21137_low_1
Description: NF21137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21137_low_1
NF21137_low_1
[»] chr4 (2 HSPs)
chr4 (18-722)||(30517654-30518357)
chr4 (531-651)||(22085524-22085644)
[»] chr2 (4 HSPs)
chr2 (512-699)||(38895856-38896043)
chr2 (513-716)||(42898221-42898424)
chr2 (612-670)||(40040758-40040816)
chr2 (627-699)||(5435530-5435602)
[»] chr1 (8 HSPs)
chr1 (513-722)||(28496106-28496315)
chr1 (512-712)||(4160304-4160504)
chr1 (513-712)||(36989267-36989466)
chr1 (513-712)||(12804511-12804710)
chr1 (512-712)||(12774864-12775064)
chr1 (531-651)||(31644076-31644196)
chr1 (512-703)||(50788818-50789009)
chr1 (531-675)||(42287081-42287225)
[»] chr8 (2 HSPs)
chr8 (528-715)||(33186659-33186846)
chr8 (512-716)||(5788722-5788926)
[»] chr7 (2 HSPs)
chr7 (513-643)||(44150800-44150930)
chr7 (512-651)||(40749378-40749517)
[»] chr5 (1 HSPs)
chr5 (569-653)||(1983162-1983246)
[»] chr3 (2 HSPs)
chr3 (618-709)||(52248460-52248551)
chr3 (621-699)||(46987818-46987896)


Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 18 - 722
Target Start/End: Original strand, 30517654 - 30518357
Alignment:
Q  18 agcagtaacatgagtacggcataaggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30517654 agcagtaacatgagtacggcataaggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataat 30517753  T
Q  118 actcaaatatatatctttagtgagtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatcgaaaaa 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30517754 actcaaatatatatctatagtgagtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatc-aaaaa 30517852  T
Q  218 cttgtgtcttaattaatctttgatcaactccttaataatttgtttgaactaattaacctcattcactttttattctcataaaagccaaataggcaaaaac 317  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30517853 cttgtgtgttaattaatctttgatcaactccttcataatttgtttgaactaattaacctcattcactttttattctcataaaagccaaataggcaaaaac 30517952  T
Q  318 aacatattattcaagttacctaaccacctataaacttgatccttatatcagatatataattttttggtaaactaagatatctccgcaa-catctgttgag 416  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  30517953 aacatattattcaagttacctaaccacctttaaactcgatccttatatcagatatataattttttggtaaactaagatatctccgcaaacatctgctgag 30518052  T
Q  417 actaattcctcgagtcactgagatccttatatcatatataccgattacaacgatgtgagcagaataacatagagatggatggataggcagttagtttacc 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||    
T  30518053 actaattcctcgagtcactgagatccttatatcatatataccgattacaacgatgtgatcagaataacatagagatggatggataggcagttaatt-acc 30518151  T
Q  517 ttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcactt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518152 ttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcactt 30518251  T
Q  617 ctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaagtt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518252 ctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaagtt 30518351  T
Q  717 ttctct 722  Q
    ||||||    
T  30518352 ttctct 30518357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 651
Target Start/End: Original strand, 22085524 - 22085644
Alignment:
Q  531 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 630  Q
    ||||| ||||||||||| |||||||| |||||  | ||    |||||||||||||| || ||||| |||||    || || ||||| |||||||||||||    
T  22085524 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 22085623  T
Q  631 tcttttcaccatgctttctac 651  Q
    |||| |||||||| |||||||    
T  22085624 tcttctcaccatgttttctac 22085644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 512 - 699
Target Start/End: Original strand, 38895856 - 38896043
Alignment:
Q  512 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 611  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||  |||||||    
T  38895856 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 38895955  T
Q  612 cacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggat 699  Q
    ||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||| || || |  |||||||||||||    
T  38895956 cacttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggat 38896043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 513 - 716
Target Start/End: Complemental strand, 42898424 - 42898221
Alignment:
Q  513 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 612  Q
    |||||||| ||||  ||||||||||||||| |||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||||    || ||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  613 acttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacaca 712  Q
    |||| ||||| ||||||||||| ||||| |||||||| || |||||||| || || ||||||| ||| || |  || ||||| || |||||||| |||||    
T  42898324 acttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 42898225  T
Q  713 agtt 716  Q
    ||||    
T  42898224 agtt 42898221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 40040816 - 40040758
Alignment:
Q  612 cacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatccc 670  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  40040816 cacttatcacacttccacttcttctcaccgtgctttctactaaagtgcttttttatccc 40040758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 699
Target Start/End: Original strand, 5435530 - 5435602
Alignment:
Q  627 cacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggat 699  Q
    |||||||| ||||| ||||| |||||||||||||| |||||||| ||||| || || |  |||||||||||||    
T  5435530 cacttcttctcaccgtgcttcctacaaaagtgcttctttatccctgttaaatctcccaaagcccttgaaggat 5435602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 513 - 722
Target Start/End: Original strand, 28496106 - 28496315
Alignment:
Q  513 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 612  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| || || || |||||   ||| || |    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  613 acttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacaca 712  Q
    | || ||||| ||||||||||| ||||| |||||||||| ||||||||||||||| || || | |||||||||||| |||||||| ||||||||||||||    
T  28496206 atttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T
Q  713 agttttctct 722  Q
     || ||||||    
T  28496306 ggtcttctct 28496315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 512 - 712
Target Start/End: Complemental strand, 4160504 - 4160304
Alignment:
Q  512 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 611  Q
    ||||||||| ||||  |||||||||||||| || || ||| |||| |||||  |||| || |||||||||||||| |||||||| ||||| ||||| ||     
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  612 cacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacac 711  Q
    || |||||||||||||||||||| ||||| ||||| ||  |||||||||| || || ||||||| ||||||||||||||||||||| |||||||| ||||    
T  4160404 catttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacac 4160305  T
Q  712 a 712  Q
    |    
T  4160304 a 4160304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 513 - 712
Target Start/End: Complemental strand, 36989466 - 36989267
Alignment:
Q  513 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 612  Q
    ||||| |||||||| ||||||||||||||||||||||| || ||||||||| |||| || |||||||||||||| || |||||||||||    || || |    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  613 acttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacaca 712  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||| |  ||||||||||| |||| ||| | |||||| |||||    
T  36989366 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 36989267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 513 - 712
Target Start/End: Original strand, 12804511 - 12804710
Alignment:
Q  513 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 612  Q
    |||||||| |||| ||| |||||||||||| | || || ||||||||||| || || || |||||||||||||| || |||||||||||    || || |    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  613 acttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacaca 712  Q
    |||| ||||| |||||||| || ||||||||||||||| |||||||||| || || ||||| | ||||||||| ||||||||||| |||||||| |||||    
T  12804611 acttttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12804710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 512 - 712
Target Start/End: Complemental strand, 12775064 - 12774864
Alignment:
Q  512 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 611  Q
    |||||| || |||| ||| |||||||||||| | || ||  |||||||||| ||||| || |||||||||||||| || |||||||||||    || ||     
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaa 12774965  T
Q  612 cacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacac 711  Q
    ||||| ||||||||||| || || ||||||||||||||| || |||| || || || ||||| | ||||||||| ||||||||||| |||||||| ||||    
T  12774964 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacac 12774865  T
Q  712 a 712  Q
    |    
T  12774864 a 12774864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 531 - 651
Target Start/End: Original strand, 31644076 - 31644196
Alignment:
Q  531 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 630  Q
    ||||| |||||||| ||||||| ||||||||| ||||| ||||||||||||||||| || |||||||||||    ||||||||||| ||||| ||||| |    
T  31644076 ccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccatt 31644175  T
Q  631 tcttttcaccatgctttctac 651  Q
    | || |||||||| |||||||    
T  31644176 ttttctcaccatgttttctac 31644196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 703
Target Start/End: Original strand, 50788818 - 50789009
Alignment:
Q  512 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 611  Q
    |||||| || |||| ||| |||||||||||  | |||||||| || ||||| || || || || || |||||||| || |||||||||||    || |||    
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  612 cacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatg 703  Q
    ||||| ||||||||||| ||||| |||||||| || | | |  |||| || || |||||||| | ||||||||||||||||||||| |||||    
T  50788918 cacttatcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatg 50789009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 675
Target Start/End: Complemental strand, 42287225 - 42287081
Alignment:
Q  531 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 630  Q
    ||||| |||||| | ||||||||||||||||| || || || || |||||||| || || |||||||||||    |||||||| || ||||| |||||||    
T  42287225 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccact 42287126  T
Q  631 tcttttcaccatgctttctacaaaagtgcttttttatcccagtta 675  Q
    |||| ||||| ||||| | | | || |||||||| || |||||||    
T  42287125 tcttctcaccgtgcttacgagagaaatgctttttaattccagtta 42287081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 528 - 715
Target Start/End: Complemental strand, 33186846 - 33186659
Alignment:
Q  528 gttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttcc 627  Q
    |||||||| |||||||| || ||||||| ||||||   ||| ||||||||||||||||| || |||||||||||    || || || |||||||| ||||    
T  33186846 gttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttcc 33186747  T
Q  628 acttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaagt 715  Q
    |||| || |||||||| |||||||||||||||||||||||||||||||| ||||| |  || || ||||||||||| || ||||||||    
T  33186746 actttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagt 33186659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 512 - 716
Target Start/End: Original strand, 5788722 - 5788926
Alignment:
Q  512 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 611  Q
    ||||||||| ||||  ||||||||||||||| | ||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||    |||||     
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  612 cacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacac 711  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||||||| || || || ||||| || || || | ||| ||||| |||||||| || ||||    
T  5788822 cacttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacac 5788921  T
Q  712 aagtt 716  Q
    |||||    
T  5788922 aagtt 5788926  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 513 - 643
Target Start/End: Original strand, 44150800 - 44150930
Alignment:
Q  513 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 612  Q
    ||||| ||||| || |||||||| |||||||||||||| ||||||||||| |||||   |||||| ||||||||||| ||||||||||| | ||| ||||    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  613 acttctcacacttccacttcttttcaccatg 643  Q
    |||| ||||| ||||| ||||| ||||||||    
T  44150900 acttgtcacatttccatttcttctcaccatg 44150930  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 651
Target Start/End: Complemental strand, 40749517 - 40749378
Alignment:
Q  512 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 611  Q
    ||||||||| ||||  || ||||| ||||| || ||||||||||||||||| ||||| | ||||||||||||||| || || || |||||    || ||     
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  612 cacttctcacacttccacttcttttcaccatgctttctac 651  Q
    ||||| ||||||||||| ||||| || ||||| |||||||    
T  40749417 cacttatcacacttccatttcttctcgccatgttttctac 40749378  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 653
Target Start/End: Complemental strand, 1983246 - 1983162
Alignment:
Q  569 tgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccacttcttttcaccatgctttctacaa 653  Q
    |||||| ||||||||||| || |||||| |||||  |||||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  1983246 tgagtgtgctttccaatccgattgaacaacataaaattttgagcacttctcacacttccacttcttctcactgtgcttcctacaa 1983162  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 709
Target Start/End: Original strand, 52248460 - 52248551
Alignment:
Q  618 tcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggac 709  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||| |  || || | |||||| ||||| ||||||||||  ||||||||    
T  52248460 tcacatttccatttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaaggattgtggtggac 52248551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 699
Target Start/End: Original strand, 46987818 - 46987896
Alignment:
Q  621 cacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggat 699  Q
    ||||||||||| || ||||  || || |||||||||||||| |||||||| ||||| || || || |||||||||||||    
T  46987818 cacttccacttattctcactgtggttcctacaaaagtgcttctttatccctgttaaatctcccagagcccttgaaggat 46987896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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