View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21137_low_3 (Length: 465)

Name: NF21137_low_3
Description: NF21137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21137_low_3
NF21137_low_3
[»] chr4 (1 HSPs)
chr4 (5-447)||(47601312-47601757)
[»] chr5 (15 HSPs)
chr5 (5-323)||(13388939-13389257)
chr5 (5-320)||(13385121-13385436)
chr5 (7-260)||(13419492-13419745)
chr5 (46-312)||(13413186-13413452)
chr5 (5-130)||(13393539-13393664)
chr5 (46-260)||(13426422-13426636)
chr5 (5-294)||(13453994-13454283)
chr5 (217-290)||(13393379-13393452)
chr5 (46-120)||(13447082-13447156)
chr5 (388-446)||(13393215-13393273)
chr5 (375-431)||(13385018-13385074)
chr5 (383-446)||(13426918-13426981)
chr5 (386-431)||(13388854-13388899)
chr5 (383-443)||(13419981-13420041)
chr5 (223-263)||(13447259-13447299)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 5 - 447
Target Start/End: Original strand, 47601312 - 47601757
Alignment:
Q  5 cacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47601312 cacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgt 47601411  T
Q  105 ggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47601412 ggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcaagattttcagcacaattttgacacgatctgcatgaatcg 47601511  T
Q  205 atcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttat 304  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47601512 atcatgaagccaacacccactttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttat 47601611  T
Q  305 actaattagaatcaaaataaagtaatggaaaaagctaag--aatttctaagataatggtg-agtagtagtgattttaattaaagcatacccaggaactag 401  Q
    |  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  47601612 ataaattagaatcaaaataaagtaatggaaaaagctaagacaatttctaagataatggtgaagtagtggtgattttaattaaagcatacccaggaactag 47601711  T
Q  402 tggataggtggatataccccattcattcttaatcatgtggagatct 447  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  47601712 tggataggtggatatgccccattcattcttaatcatgtggagatct 47601757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 13389257 - 13388939
Alignment:
Q  5 cacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgt 104  Q
    ||||||| ||||| |||| |||||||||||| || ||||| |||||||||||||| |||| ||| ||| |||||| ||||||||| |||||||| |||||    
T  13389257 cacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgt 13389158  T
Q  105 ggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcg 204  Q
    | | || ||||| ||||| |||||||||||||||   |||||    ||||| ||| |||| ||||| ||| ||||||||||||| ||||  ||||||||     
T  13389157 gctcgttccatcgcgatacttggcaccacatgtgaaagtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatca 13389058  T
Q  205 atcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttat 304  Q
    | |||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  13389057 accatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatgcctgtatttattat 13388958  T
Q  305 actaattagaatcaaaata 323  Q
    |  |||||||||| |||||    
T  13388957 ataaattagaatctaaata 13388939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 5 - 320
Target Start/End: Complemental strand, 13385436 - 13385121
Alignment:
Q  5 cacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgt 104  Q
    ||||||| ||||| |||| |||||||||||| || ||||| |||||||||||||| |||| |||  | ||||||| ||||||||| |||||||||| |||    
T  13385436 cacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatgtgaaccacgaagttctcagccacaaccaatgagtcagaataacctccgtgtgt 13385337  T
Q  105 ggtggtgccatcacgatatttggcaccacatgtggctgtaaa-gcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatc 203  Q
    | |||| ||||||||||   || |||||  ||| |  ||  | ||| || || ||| |||| ||||| ||| ||||||||||||||||||  ||||||||    
T  13385336 gatggttccatcacgatgcatgccaccaactgtagtagtgtatgcgggg-cagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatc 13385238  T
Q  204 gatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttctta 303  Q
     || ||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  13385237 aattatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatgcctgtatttctta 13385138  T
Q  304 tactaattagaatcaaa 320  Q
    ||  |||||||||||||    
T  13385137 tataaattagaatcaaa 13385121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 13419492 - 13419745
Alignment:
Q  7 caaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtgg 106  Q
    |||||||||||| | | ||| ||||| || || | ||| |||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||     
T  13419492 caaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtga 13419591  T
Q  107 tggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgat 206  Q
     ||||||||||||||| || |||||||||||| |||||||    || || ||| | || ||||  |||||||||||||| || || |  |||||||| |     
T  13419592 cggtgccatcacgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaac 13419691  T
Q  207 catgaagccaacacccactttatctccaactttgaacttttctactttgcttcc 260  Q
    |||| | || ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  13419692 catgtatcccacaccaactttgtctccaactttaaacttttctactttgcttcc 13419745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 312
Target Start/End: Original strand, 13413186 - 13413452
Alignment:
Q  46 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa 145  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| || |||  ||| ||||||||||| ||||||||||||||| ||  ||    
T  13413186 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaa 13413285  T
Q  146 agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt 245  Q
    |    || || ||| | || ||||| |||  ||||| ||| || ||||  |||||||| |||| | |||||||||| ||||| ||||||||||| |||||    
T  13413286 atttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaactt 13413385  T
Q  246 ttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatactaatta 312  Q
     || ||||||||||| |||| ||| ||||||||  ||| |||||| |||||||| ||| || |||||    
T  13413386 ctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattacaccaatta 13413452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 13393664 - 13393539
Alignment:
Q  5 cacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgt 104  Q
    ||||||| |||||||||| || ||||||||| || ||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  13393664 cacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgt 13393565  T
Q  105 ggtggtgccatcacgatatttggcac 130  Q
    | || | |||||||  ||||||||||    
T  13393564 gatgcttccatcactgtatttggcac 13393539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 260
Target Start/End: Original strand, 13426422 - 13426636
Alignment:
Q  46 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa 145  Q
    |||||| ||| |||||||||||| ||| ||||||||||||| || |||||||| ||||||  | ||||||||||||| || |||||||||||  ||||      
T  13426422 ggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgttt 13426521  T
Q  146 agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt 245  Q
       | || || ||| | || |||| ||| ||||||||||  || || |  |||||||| | |||| | || || || ||||| ||||||||||| |||||    
T  13426522 gttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaactt 13426621  T
Q  246 ttctactttgcttcc 260  Q
    |||||||||||||||    
T  13426622 ttctactttgcttcc 13426636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 13453994 - 13454283
Alignment:
Q  5 cacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgt 104  Q
    ||||||| ||||||||||  || ||||| || ||   ||| |||||| ||| |||||||||||||||   |||||||||||||||| | ||||| |  ||    
T  13453994 cacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccatgagt 13454093  T
Q  105 ggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcg 204  Q
    | |||| |||||||  ||||||| ||||   |||  ||| ||  | ||||| ||| | || ||||| ||| ||||||||||||| ||    || |||||     
T  13454094 gctggttccatcactgtatttggaaccatcagtgagtgtcaattggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatca 13454193  T
Q  205 atcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctg 294  Q
    | || | | || ||||| ||| | |||||||||||||||||||  |||||||||||||||| ||| ||||| |||||||| |||||||||    
T  13454194 accaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatgtctg 13454283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 13393452 - 13393379
Alignment:
Q  217 acacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatg 290  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| || |  |||||||||||| ||||||||||    
T  13393452 acacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatg 13393379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 13447082 - 13447156
Alignment:
Q  46 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 120  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  13447082 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 13447156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 13393273 - 13393215
Alignment:
Q  388 tacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatc 446  Q
    ||||||||||||||||||||||| || || |||||||||||||| ||||| || |||||    
T  13393273 tacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatc 13393215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 13385074 - 13385018
Alignment:
Q  375 tttaattaaagcatacccaggaactagtggataggtggatataccccattcattctt 431  Q
    |||||||| | ||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  13385074 tttaattagaacataccccggaactagtggataggttgatatgccccattcgttctt 13385018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 13426918 - 13426981
Alignment:
Q  383 aagcatacccaggaactagtggataggtggatataccccattcattcttaatcatgtggagatc 446  Q
    |||||||||| ||||||| ||||||| ||||  | |||||||||||||| ||||| ||||||||    
T  13426918 aagcataccctggaactaatggatagatggaattgccccattcattcttcatcatatggagatc 13426981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 13388899 - 13388854
Alignment:
Q  386 catacccaggaactagtggataggtggatataccccattcattctt 431  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  13388899 cataccccggaactaggggataggtagatattccccattcattctt 13388854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 13419981 - 13420041
Alignment:
Q  383 aagcatacccaggaactagtggataggtggatataccccattcattcttaatcatgtggag 443  Q
    |||||||||| ||||||| ||||||| ||||  | |||||||||||||| ||||| |||||    
T  13419981 aagcataccctggaactaatggatagatggaatttccccattcattcttcatcatatggag 13420041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 13447259 - 13447299
Alignment:
Q  223 actttatctccaactttgaacttttctactttgcttcccac 263  Q
    ||||| ||||||||||| ||||||| |||||||||||||||    
T  13447259 actttgtctccaactttaaacttttttactttgcttcccac 13447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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