View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21137_low_5 (Length: 361)
Name: NF21137_low_5
Description: NF21137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21137_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 32566129 - 32566467
Alignment:
| Q |
9 |
agcaaaggatggagaagactagaaatggaggtgaagagaatcttaaactcgggagtcttatagatattgtactctcttggaccctcgaggatgttctcaa |
108 |
Q |
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| T |
32566129 |
agcaaaggatggagaagactagaaatggaagtgaagagaatcttaaactcgggagtcttatagatattgtactctcttggaccctcgaggatgctctcaa |
32566228 |
T |
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| Q |
109 |
tgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcacaatgaaaaagtgtacttggtttttgaaaaataatttgaacatgaaagaa |
208 |
Q |
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| T |
32566229 |
tgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcgcaatgaaaaagtgtacttggtttttgaaaaataatttgaacatgaaagaa |
32566328 |
T |
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| Q |
209 |
tac-aaatcttacaaagaacccgtgtcaaaatctcaataatgattgattatttatatatattttctccacttcattgttagattttctccctttttagta |
307 |
Q |
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| T |
32566329 |
tacaaaatcttacaaagaactcgtgtcaaaatctcgataatgattgattatttatatagattttctccacttcattgttagattttcaccctttttagta |
32566428 |
T |
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| Q |
308 |
gttgcaaagatgttatgttgtttaagagttgcaaataat |
346 |
Q |
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| T |
32566429 |
gttgcaaagatgttatgttgtttaagagttgcaaataat |
32566467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 32648253 - 32648017
Alignment:
| Q |
59 |
gggagtcttatagatattgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacaccctttacaacactca |
158 |
Q |
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| T |
32648253 |
gggagtcttatagatattgtactttcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacacccttttcaatactca |
32648154 |
T |
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| Q |
159 |
caatgaaaaagtgtacttggtttttgaaaaataatttgaacatgaaagaatacaaa-------tcttacaaagaacccgtgtcaaaatctcaataatgat |
251 |
Q |
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| T |
32648153 |
caatgaaaaagtgaacttggtttttgaaaaagaatttgaacatgaaagagtacaaattcattgtgttacaaagaaatggtgttaaaatctcaataatgat |
32648054 |
T |
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| Q |
252 |
tgattatttatatatattttctccacttcattgttag |
288 |
Q |
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| T |
32648053 |
tgattgtttatatagattttctccacttcattgttag |
32648017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 32527763 - 32527666
Alignment:
| Q |
69 |
tagatattgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcacaatgaaaa |
167 |
Q |
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| T |
32527763 |
tagatattgtactctcatggcccctcgaggatgttctcaacgaaaatctttacaaacacaaggtttcatttaca-ccttttgaacactcacaatgaaaa |
32527666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 32534064 - 32534001
Alignment:
| Q |
75 |
ttgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttt |
138 |
Q |
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|||||||||| |||||| |||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
32534064 |
ttgtactctcatggacctacgaggatgttttgaacgaaaatctttacaaagacaaggtttcttt |
32534001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 32517016 - 32516951
Alignment:
| Q |
68 |
atagatattgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtt |
133 |
Q |
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|||||||||||| |||||||||| || |||||| |||||||||||||||||| |||| || ||||| |
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| T |
32517016 |
atagatattgtattctcttggactctagaggatattctcaatgaaaatcttttcaaataccaggtt |
32516951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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