View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21137_low_8 (Length: 298)
Name: NF21137_low_8
Description: NF21137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21137_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 50822219 - 50822508
Alignment:
| Q |
1 |
cataacataacgtttctgctgcttccttgaacagttcgtaatcgcattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822219 |
cataacataacgtttctgctgcctccttgaacagttcgtaatcacattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgc |
50822318 |
T |
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| Q |
101 |
tgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822319 |
tgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatc |
50822418 |
T |
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| Q |
201 |
acataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822419 |
acataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
50822508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 50853642 - 50853353
Alignment:
| Q |
1 |
cataacataacgtttctgctgcttccttgaacagttcgtaatcgcattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853642 |
cataacataacgtttctgctgcctccttgaacagttcgtaatcacattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgc |
50853543 |
T |
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| Q |
101 |
tgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853542 |
tgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatc |
50853443 |
T |
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| Q |
201 |
acataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853442 |
acataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
50853353 |
T |
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