View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21138_high_1 (Length: 427)
Name: NF21138_high_1
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21138_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 38 - 388
Target Start/End: Complemental strand, 14653590 - 14653241
Alignment:
| Q |
38 |
cctatataaggaaactgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcattctttagtgactactgatatatgatcatatat |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14653590 |
cctatataaggaaactgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcattctttagtgactactgatatatgatcatatat |
14653491 |
T |
|
| Q |
138 |
attaaggaaagctattgccattagcnnnnnnnnccttgttgatttttgttacattgacagctagtttaccttccgaactgtgccttattcgaaaatggta |
237 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14653490 |
tttaaggaaagctattgccattagctttttttcccttgttgatttttgttacattgacagctagtttaccttccgaactgtgccttattcgaaaatggta |
14653391 |
T |
|
| Q |
238 |
tcaaagatattgatcatgtannnnnnncaatgtcataacagtgagctttgttggcgtagagctggtctttcgaattttcattcaacagcatgcttcactt |
337 |
Q |
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|| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
14653390 |
tcgaagatattgattatgt-gttttttcaatgtcataacagtgagctttgttggcgtagagctggtctttggaatttttattcagcagcatgcttcactt |
14653292 |
T |
|
| Q |
338 |
cacactctcggactggaacagaaattttttcctgcatgttgcagaatttta |
388 |
Q |
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| T |
14653291 |
cacactctcggactggaacagaaattttttcctgcatgttgcagaatttta |
14653241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 38 - 388
Target Start/End: Complemental strand, 14663381 - 14663032
Alignment:
| Q |
38 |
cctatataaggaaactgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcattctttagtgactactgatatatgatcatatat |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14663381 |
cctatataaggaaactgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcattctttagtgactactgatatatgatcatatat |
14663282 |
T |
|
| Q |
138 |
attaaggaaagctattgccattagcnnnnnnnnccttgttgatttttgttacattgacagctagtttaccttccgaactgtgccttattcgaaaatggta |
237 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14663281 |
tttaaggaaagctattgccattagctttttttcccttgttgatttttgttacattgacagctagtttaccttccgaactgtgccttattcgaaaatggta |
14663182 |
T |
|
| Q |
238 |
tcaaagatattgatcatgtannnnnnncaatgtcataacagtgagctttgttggcgtagagctggtctttcgaattttcattcaacagcatgcttcactt |
337 |
Q |
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|| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
14663181 |
tcgaagatattgattatgt-gttttttcaatgtcataacagtgagctttgttggcgtagagctggtctttggaatttttattcagcagcatgcttcactt |
14663083 |
T |
|
| Q |
338 |
cacactctcggactggaacagaaattttttcctgcatgttgcagaatttta |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14663082 |
cacactctcggactggaacagaaattttttcctgcatgttgcagaatttta |
14663032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 14706906 - 14706997
Alignment:
| Q |
54 |
gattacttggagaacaaagaggcaactca--gtgaataagggaagctagttcattctttagtgactactgatatatgatcatatatattaag |
143 |
Q |
| |
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|||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14706906 |
gatttcttggagaacaaagaaacaactcacagtgaataaggaaagctagttcattctttagtgactactgatatatgatcatatattttaag |
14706997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 14668749 - 14668639
Alignment:
| Q |
272 |
ataacagtgagctttgttggcgtagagctggtctttcgaattttcattcaacagcatgcttcacttcacactctcggactggaacagaaattttttcctg |
371 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||| || || ||||| ||| |
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| T |
14668749 |
ataacagtgagctttgttggcgtagagctggtc-ttcgaaatttcattcaacagcat-----acttcgcactctcggactggagcataattttttgtctg |
14668656 |
T |
|
| Q |
372 |
catgttgcagaatttta |
388 |
Q |
| |
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| ||||||||||||||| |
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| T |
14668655 |
cgtgttgcagaatttta |
14668639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 14707105 - 14707162
Alignment:
| Q |
179 |
atttttgttacattgacagctagtttaccttccgaactgtgccttattcgaaaatggt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
14707105 |
atttttgttacattgacagctagtttaccttccgaactgtgccttatgcaaaaatggt |
14707162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 14668814 - 14668747
Alignment:
| Q |
179 |
atttttgttacattgacagctagtttaccttccgaactgtgccttattcgaaaatggtatcaaagata |
246 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||| |||||| |
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| T |
14668814 |
atttttgttacattgacaactattttaccttccgaattgtgccttatgcgaaaatggtatcgaagata |
14668747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 14669001 - 14668931
Alignment:
| Q |
51 |
actgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcattctttagtgactactg |
121 |
Q |
| |
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||||||| ||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
14669001 |
actgatttcttggagaacaaagaaacaagtcagtgaataaggcaagccagttcattctttagtgactactg |
14668931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 30732451 - 30732561
Alignment:
| Q |
272 |
ataacagtgagctttgttggcgtagagctggtctttcgaattttcattcaacagcatgcttcacttcacactctcggactggaacagaaattttttcctg |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||| ||||||||||||||| ||||| ||||| ||| |
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| T |
30732451 |
ataacagtgagctttgttggcgtagagctggtc-ttcgaaatttcattcaacagtat-----acttcgcactctcggactggagcagaattttttgtctg |
30732544 |
T |
|
| Q |
372 |
catgttgcagaatttta |
388 |
Q |
| |
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| ||||||||||||||| |
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| T |
30732545 |
cgtgttgcagaatttta |
30732561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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