View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21138_high_3 (Length: 250)
Name: NF21138_high_3
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21138_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 26349216 - 26348982
Alignment:
| Q |
16 |
atcaccaacaaaaaccatccacatacatgtcctaagaaacataatcaccgcaaattgtgaaaacgttgagtacatactcaaaacaaaattcgaaaactac |
115 |
Q |
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| T |
26349216 |
atcaccaacaaaaaccatccacatacatgtcctaagaaacataatcaccgcaaattgtgaaaacgttgagtacatactcaaaacaaaattcgaaaactac |
26349117 |
T |
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| Q |
116 |
ccaaaaggaaaacccttctcaacaatcttaggtgattttctaggtcgtggtatcttcaacgtggatggtgatttatggaaatttcaaaagaagatggcaa |
215 |
Q |
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| T |
26349116 |
ccaaaaggaaaacccttctcatcaatcttaggtgattttctaggtcgtggtatcttcaacgtggatggtgatttatggaaatttcaaaagaagatggcaa |
26349017 |
T |
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| Q |
216 |
gtttagaactcaacaaacaatccgtaagatcattt |
250 |
Q |
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| T |
26349016 |
gtttagaactcaacaaacaatccataagatcattt |
26348982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 19931812 - 19931915
Alignment:
| Q |
74 |
gaaaacgttgagtacatactcaaaacaaaattcgaaaactacccaaaaggaaaacccttctcaacaatcttaggtgattttctaggtcgtggtatcttca |
173 |
Q |
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| T |
19931812 |
gaaaacgtggagtatatactcaaaacaaatttcaacaattaccctaaaggtaaacaattctctacaatccttggtgatcttcttggccgtggtatcttca |
19931911 |
T |
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| Q |
174 |
acgt |
177 |
Q |
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| T |
19931912 |
acgt |
19931915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 36170625 - 36170508
Alignment:
| Q |
110 |
aactacccaaaaggaaaacccttctcaacaatcttaggtgattttctaggtcgtggtatcttcaacgtggatggtgatttatggaaatttcaaaagaaga |
209 |
Q |
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| T |
36170625 |
aactacccaaaaggaaaaccattctctacaatccttggtgatcttcttggtaatggaatatttaacgttgacggtgtttcatggaactttcaacgtaaaa |
36170526 |
T |
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| Q |
210 |
tggcaagtttagaactca |
227 |
Q |
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|||||||| | ||||||| |
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| T |
36170525 |
tggcaagtcttgaactca |
36170508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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