View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21138_low_1 (Length: 512)
Name: NF21138_low_1
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21138_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 27404322 - 27404000
Alignment:
| Q |
18 |
agttcagaagttcttatgcccgtaataaacaagccataacactaaatcaattgaagtgaacagtgtttaaagttcaacaaccttattctttgcatgtctc |
117 |
Q |
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| T |
27404322 |
agttcagaagttcttatgcccgtaataaacaagtcataacactaaatcaattgaagtgaacagtgtttaaagttcaacaaccttattctttgcatgtctc |
27404223 |
T |
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| Q |
118 |
atgtcttccatgtttaaaggtgcgagggaaatcccttgatcatcgatatgttcttctatagcatcggaagcgtcttttctgattttaaattctgcctcct |
217 |
Q |
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| T |
27404222 |
atgtcttccatgtttaaaggcgcaagggaaatcccttgatcatcgatatgttcttctatagtatcagaagcatcttctgcgatttcaaattctgcctcct |
27404123 |
T |
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| Q |
218 |
ctttcttcttttcctgaaataagtggttattacttagttttacatcacacaaacaatacacattggatagagatcattttaacaatatcacataactaga |
317 |
Q |
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| T |
27404122 |
ctttcttcttttcctgaaataagtggttattacttagttttacatcacacaaacaatacacattggatagagatcattttaaca--atcacattactaga |
27404025 |
T |
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| Q |
318 |
agtgatttagtaactaccatttttg |
342 |
Q |
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| T |
27404024 |
agtgatttagtaactagcatttttg |
27404000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 486
Target Start/End: Complemental strand, 45989514 - 45989475
Alignment:
| Q |
447 |
tagagaatgaccaacaaaatgaaccttaagatcacttcca |
486 |
Q |
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| T |
45989514 |
tagagaatgaccaacaaaatgaaccttaagatcacttcca |
45989475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 44936476 - 44936319
Alignment:
| Q |
97 |
accttattctttgcatgtctcatgtcttccatgtttaaaggtgcgagggaaatcccttgatcatcgatatgttcttctatagcatcggaagcgtcttttc |
196 |
Q |
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| T |
44936476 |
accttattctttgcctctctcatgtcctccatgtttaaaggcctgagggcaatcacttgatcttctttatcttcttcggtagcaatggaagcttcttcta |
44936377 |
T |
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| Q |
197 |
tgattttaaattctgcctcctctttcttcttttcctgaaataagtggttattacttag |
254 |
Q |
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| T |
44936376 |
agatttcaacttctgtcacctttttcttctttgtctaaaataaatggtaattacttag |
44936319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 45989855 - 45989794
Alignment:
| Q |
97 |
accttattctttgcatgtctcatgtcttccatgtttaaaggtgcgagggaaatcccttgatc |
158 |
Q |
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| T |
45989855 |
accttattctttgcctgtctcatgtcttccatgttcaaaggccggagggaaatcacttgatc |
45989794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 44927948 - 44927911
Alignment:
| Q |
207 |
ttctgcctcctctttcttcttttcctgaaataagtggt |
244 |
Q |
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| T |
44927948 |
ttctgcctcctttttcttctttttctgaaataagtggt |
44927911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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