View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21138_low_3 (Length: 382)
Name: NF21138_low_3
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21138_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 30896508 - 30896154
Alignment:
| Q |
20 |
agccggaaccctaacaagtaccggcgtcaataacggcgtcctttgcggtaaagctcccggtaaataaccccacatgtataccattttctccttcacttca |
119 |
Q |
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| T |
30896508 |
agccggaaccctaacaagtaccggcgtcaataacggcgtcctttgcggtaaagctcccggtaaataaccccacatgtataccattttctccttcacttca |
30896409 |
T |
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| Q |
120 |
caccctccaccattcatgattactacgattttcccaccaaaaacacaaaacccaatgcagttaatttcaaaactgtttttgtggcggtttctgataaaaa |
219 |
Q |
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| T |
30896408 |
caccctccaccattcatgattactacgattttcccaccaaaaacacaaaacccaatgcagttaatttcaaaactgtttttgtggcggtttctgata-aaa |
30896310 |
T |
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| Q |
220 |
actttgaagagtgaaagaaacaattgacctaaatgcgttgtcttcgttgcttcgttaaaaagagggtgtatcattttcactgggatgcgtgcgccacgta |
319 |
Q |
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| T |
30896309 |
actttgaagagtgaaagaaacaattgacctaaatgcgttgtcttcgttgcttcgttaaaaagagggtgtatcattttcactgggatgcgtgcgccacgta |
30896210 |
T |
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| Q |
320 |
ggattctcacgtggttcaactaacacgtggcgtgatgtaagccgttatattcttcg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30896209 |
ggattctcacgtggttcaactaacacgtggcgtgatgtaagccgttattttcttcg |
30896154 |
T |
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