View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21138_low_4 (Length: 251)
Name: NF21138_low_4
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21138_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26348950 - 26348716
Alignment:
| Q |
1 |
atcgactcatccctctactccaaaaccaaaacctaaaccaagttgtttttgatttgcaagatgttttcaaaagattctcttttgatagtatttgtagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348950 |
atcgactcatccctctactccaaaaccaaaacctaaaccaagttgtttttgatttgcaagatgttttcaaaagattctcttttgatagtatttgtagatt |
26348851 |
T |
|
| Q |
101 |
ttcctttggtttagaccctatgtgtttagaaacatccttacctatgtcggattttgctctttcttttgatctagcatcaaaattatcagctgaaagagcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348850 |
ttcctttggtttagaccctatgtgtttagaaacatccttacctatgtcggatttcgctctttcttttgatctagcatcaaaattatcagctgaaagagcc |
26348751 |
T |
|
| Q |
201 |
atggttgtgtctccattaatttggaagatcaaaag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348750 |
atggttgtgtctccattaatttggaagatcaaaag |
26348716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University