View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21138_low_6 (Length: 249)

Name: NF21138_low_6
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21138_low_6
NF21138_low_6
[»] chr3 (3 HSPs)
chr3 (4-238)||(9105703-9105937)
chr3 (36-238)||(22247195-22247398)
chr3 (46-98)||(25987973-25988025)
[»] chr2 (2 HSPs)
chr2 (12-238)||(26677751-26677977)
chr2 (36-182)||(9733175-9733321)
[»] chr1 (1 HSPs)
chr1 (15-238)||(2954407-2954629)
[»] chr4 (1 HSPs)
chr4 (31-238)||(17520676-17520883)
[»] chr8 (2 HSPs)
chr8 (33-190)||(9474558-9474716)
chr8 (36-184)||(9307939-9308088)
[»] chr7 (1 HSPs)
chr7 (139-184)||(22680241-22680286)
[»] chr5 (1 HSPs)
chr5 (139-184)||(1910902-1910947)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 9105937 - 9105703
Alignment:
Q  4 aggagctaagctaagttacagaaggttgacagaacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaa 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9105937 aggagctaagctaagttacaaaaggttgacagaacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaa 9105838  T
Q  104 aaacacaagaaacttaatttgttcgcccatggagagaatatgctcctccttatgttggaaaatacgcttatttctctctttccaaatgactgaaacaaac 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  9105837 aaacacaagaaacttaacttgttcgcccatggagagaatatgctcctccttatgttggaaaatacgcttatttctctctttccaaatgatggaaacaaac 9105738  T
Q  204 actaaccataacatcttgaacactaagcacatatt 238  Q
    |||||||| ||||||||||||||||||||||||||    
T  9105737 actaaccacaacatcttgaacactaagcacatatt 9105703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 22247195 - 22247398
Alignment:
Q  36 aacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaagaaacttaatttgttcgcccatgg 135  Q
    |||||||| ||||||||| | ||||| |||||||||| ||||||| | || || |||||||||||| |||||||||||||||||| ||| || | |||||    
T  22247195 aacataggcttttgcctcaagaaattgtagtcaaaatcgaataaaacaaacttcgatttaaaccaccaaaacacaagaaacttaacttgctcacacatgg 22247294  T
Q  136 agagaa-tatgctcctccttatgttggaaaatacgcttatttctctctttccaaatgactgaaacaaacactaaccataacatcttgaacactaagcaca 234  Q
    | | || ||||||||| ||||||||||||| ||| | ||||||||||||| ||||| |  ||||||| | |||||| |||||||||||||| ||||||||    
T  22247295 aaaaaaatatgctccttcttatgttggaaagtacacctatttctctcttttcaaataatggaaacaaccgctaaccgtaacatcttgaacagtaagcaca 22247394  T
Q  235 tatt 238  Q
    ||||    
T  22247395 tatt 22247398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 25988025 - 25987973
Alignment:
Q  46 tttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaac 98  Q
    ||||||| ||||||||  ||||||||||||||||| | |||||||||||||||    
T  25988025 tttgccttcaaaaattgcagtcaaaattgaataaaacaaattttgatttaaac 25987973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 26677977 - 26677751
Alignment:
Q  12 agctaagttacagaaggttgacagaacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaa 111  Q
    |||||||||| ||||| | | |||||||||| |||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  26677977 agctaagttagagaagttaggcagaacatagaattttgcctccaaatattgtagtcaaaattgaataaagaaaattttgatttaaaccacataaacacaa 26677878  T
Q  112 gaaacttaatttgttcgcccatggagagaatatgctcctccttatgttggaaaatacgcttatttctctctttccaaatgactgaaacaaacactaacca 211  Q
    ||| |||||  ||||||| |||| | ||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |  |||| || | |||||||    
T  26677877 gaagcttaacatgttcgctcatgaaaagaatatgctcttccttatgttggaaaatacgtttatttctctctttctaaataatggaaagaaccgctaacca 26677778  T
Q  212 taacatcttgaacactaagcacatatt 238  Q
    ||||| |||||||||||||||||||||    
T  26677777 taacaccttgaacactaagcacatatt 26677751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 9733321 - 9733175
Alignment:
Q  36 aacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaagaaacttaatttgttcgcccatgg 135  Q
    |||||||||||||||||| ||||||| ||||||||||  ||||||   |||||||||||||||||| |||||||||||| |||||  ||||| ||  | |    
T  9733321 aacataggattttgcctctaaaaattatagtcaaaatcaaataaaataaattttgatttaaaccaccaaaacacaagaagcttaacatgttcaccatttg 9733222  T
Q  136 agagaatatgctcctccttatgttggaaaatacgcttatttctctct 182  Q
    | |||||||  |||||||||||||||||||||| |  ||||||||||    
T  9733221 aaagaatatattcctccttatgttggaaaatactcacatttctctct 9733175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 2954629 - 2954407
Alignment:
Q  15 taagttacagaaggttgacagaacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaagaa 114  Q
    ||||||||| ||| | | ||||||||| || |||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||| |||||| |||||    
T  2954629 taagttacaaaagttaggcagaacataagagtttgcctccaaaaattgtagtcaaaatcgaataaagc-aatttcgatttaaaccaccaaaacataagaa 2954531  T
Q  115 acttaatttgttcgcccatggagagaatatgctcctccttatgttggaaaatacgcttatttctctctttccaaatgactgaaacaaacactaaccataa 214  Q
     ||| |  || ||||||||||| |||||||||| |||||||||||||||||||||| || |||| ||||| ||||| |  ||||||| ||||||||||||    
T  2954530 gcttcacctgatcgcccatggaaagaatatgcttctccttatgttggaaaatacgcctacttctttcttttcaaataatggaaacaatcactaaccataa 2954431  T
Q  215 catcttgaacactaagcacatatt 238  Q
    ||||| ||||||||||||||||||    
T  2954430 catctcgaacactaagcacatatt 2954407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 17520676 - 17520883
Alignment:
Q  31 gacagaacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaagaaacttaatttgttcgcc 130  Q
    |||| |||||| ||||||||||||||||||| |||||||||| ||||||| |  | || |||||||||||| ||||||| |||| |||||  ||| ||      
T  17520676 gacaaaacataagattttgcctccaaaaattgtagtcaaaatcgaataaaacagacttcgatttaaaccaccaaaacactagaatcttaacctgtccgta 17520775  T
Q  131 catggagagaatatgctcctccttatgttggaaaatacgcttatttctctctttccaaatgactgaaacaaacactaaccataacatcttgaacactaag 230  Q
    |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||  | |  ||||||| ||||||||||||||||||||||||||||    
T  17520776 catggaaaaaatatgctcctccttatgttggaaaataggcttatttctctctttccaggtaatggaaacaaccactaaccataacatcttgaacactaag 17520875  T
Q  231 cacatatt 238  Q
    ||||||||    
T  17520876 cacatatt 17520883  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 9474558 - 9474716
Alignment:
Q  33 cagaacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaagaaacttaa-tttgttcgccc 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||   ||  | |||    
T  9474558 cagaacataggattttgcctccaaaaattgtagtcaaaattgaataaaacaaatttcgatttaaaccacaaaaacacaagaagcttaaccctgaactccc 9474657  T
Q  132 atggagagaatatgctcctccttatgttggaaaatacgcttatttctctctttccaaat 190  Q
    ||||| |||||||| ||||| ||||||||||||||| || |||||||||||||||||||    
T  9474658 atggaaagaatatgttcctcattatgttggaaaataagcctatttctctctttccaaat 9474716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 9308088 - 9307939
Alignment:
Q  36 aacataggattttgcctccaaaaattctagtcaaaattgaataaagctaattttgatttaaaccacaaaaacacaagaaacttaatttgttcg-cccatg 134  Q
    |||||| |||||||| || | ||||| ||||||| || ||||||| | ||||| |||||||||||  |||||||||||| |||||  |||| |  |||||    
T  9308088 aacatatgattttgcttcaacaaattgtagtcaatatcgaataaaacaaatttcgatttaaaccagtaaaacacaagaagcttaacgtgtttgttccatg 9307989  T
Q  135 gagagaatatgctcctccttatgttggaaaatacgcttatttctctcttt 184  Q
    || |||||||| ||| |||||| ||| ||||||| | |||||| ||||||    
T  9307988 gaaagaatatggtccgccttatattgaaaaatacacctatttccctcttt 9307939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 22680286 - 22680241
Alignment:
Q  139 gaatatgctcctccttatgttggaaaatacgcttatttctctcttt 184  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||    
T  22680286 gaataggctcctccttatgttgaaaaatacgcttgtttctctcttt 22680241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 1910947 - 1910902
Alignment:
Q  139 gaatatgctcctccttatgttggaaaatacgcttatttctctcttt 184  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||    
T  1910947 gaataggctcctccttatgttgaaaaatacgcttctttctctcttt 1910902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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