View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21138_low_7 (Length: 239)

Name: NF21138_low_7
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21138_low_7
NF21138_low_7
[»] chr2 (2 HSPs)
chr2 (21-129)||(45473156-45473264)
chr2 (19-129)||(12170148-12170248)
[»] chr3 (2 HSPs)
chr3 (129-222)||(1241270-1241363)
chr3 (129-220)||(42519504-42519596)
[»] scaffold0200 (1 HSPs)
scaffold0200 (129-222)||(207-300)
[»] chr5 (2 HSPs)
chr5 (129-222)||(41972899-41972992)
chr5 (23-96)||(31195839-31195912)
[»] chr6 (3 HSPs)
chr6 (28-131)||(14017941-14018044)
chr6 (18-131)||(13996632-13996746)
chr6 (79-131)||(30387004-30387056)
[»] chr7 (1 HSPs)
chr7 (41-128)||(39559609-39559696)
[»] chr4 (1 HSPs)
chr4 (20-96)||(51039351-51039427)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 45473264 - 45473156
Alignment:
Q  21 atatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgttgaatttgttttcgtaacaagcag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45473264 atatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtgtaattcttgcttttcgttgaatttgttttcgtaacaagcag 45473165  T
Q  121 cattagcct 129  Q
    |||||||||    
T  45473164 cattagcct 45473156  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 12170248 - 12170148
Alignment:
Q  19 caatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgttgaatttgttttcgtaacaagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||          |||||||||||||||||||||||    
T  12170248 caatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtgtaattc----------ttgaatttgttttcgtaacaagc 12170159  T
Q  119 agcattagcct 129  Q
    |||||||||||    
T  12170158 agcattagcct 12170148  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 1241363 - 1241270
Alignment:
Q  129 tttctaaactcttaactttctttgtcatttgaaagaacacaatgggtggaggttacatagcacatggctctgaaaaagaatatccgggaaaact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1241363 tttctaaactcttaactttctttgtcatttgaaagaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaact 1241270  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 42519596 - 42519504
Alignment:
Q  129 tttctaaactcttaactttctttgtcatttgaaagaa-cacaatgggtggaggttacatagcacatggctctgaaaaagaatatccgggaaaa 220  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||    
T  42519596 tttctaaactcttaactttttttgtgatttgaaagaaacacaatggctggaggttacatagcacaaggctctggaaaagaatatccaggaaaa 42519504  T

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Target: scaffold0200 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 300 - 207
Alignment:
Q  129 tttctaaactcttaactttctttgtcatttgaaagaacacaatgggtggaggttacatagcacatggctctgaaaaagaatatccgggaaaact 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  300 tttctaaactcttaactttctttgtcatttgaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaact 207  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 41972992 - 41972899
Alignment:
Q  129 tttctaaactcttaactttctttgtcatttgaaagaacacaatgggtggaggttacatagcacatggctctgaaaaagaatatccgggaaaact 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41972992 tttctaaactcttaactttctttgtcatttgaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaact 41972899  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 31195912 - 31195839
Alignment:
Q  23 atggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgt 96  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  31195912 atggtaatatagaaaatggctgatggatatatcggtaattacaactttaaattagtgtaattcttgcttttcgt 31195839  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 14017941 - 14018044
Alignment:
Q  28 aatatagaaaatagctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgttgaatttgttttcgtaacaagcagcattagc 127  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||     
T  14017941 aatatagaaaatagctgttgaatagattggtaattacaacttaaaattagtgtaattcttgcttttcgttgaatttgttttcgtaacaaacatcattagt 14018040  T
Q  128 cttt 131  Q
    ||||    
T  14018041 cttt 14018044  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 13996632 - 13996746
Alignment:
Q  18 acaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgttgaa-tttgttttcgtaacaa 116  Q
    ||||||||| ||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||||||| ||||||||||||||||    
T  13996632 acaatatggaaatatagtaaatagctaatgaatagattggtaattacaacttaaaattagtgtaattcttgtttgtcgttgaattttgttttcgtaacaa 13996731  T
Q  117 gcagcattagccttt 131  Q
     || |||||| ||||    
T  13996732 acatcattagtcttt 13996746  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 30387056 - 30387004
Alignment:
Q  79 gtaattcttgcttttcgttgaatttgttttcgtaacaagcagcattagccttt 131  Q
    ||||||||||||||||||||||||||||||| |||||| || |||||| ||||    
T  30387056 gtaattcttgcttttcgttgaatttgttttcctaacaaacaacattagtcttt 30387004  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 39559609 - 39559696
Alignment:
Q  41 gctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgttgaatttgttttcgtaacaagcagcattagcc 128  Q
    |||||||| |||||||||||||||| ||||||||||| | | ||| | ||||||||||||||  |||||||||||| |||||||||||    
T  39559609 gctgatggctagattggtaattacagctttaaattagtgcagttcctacttttcgttgaattgattttcgtaacaaacagcattagcc 39559696  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 51039351 - 51039427
Alignment:
Q  20 aatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagggtaattcttgcttttcgt 96  Q
    |||||||| ||||| ||||| | ||||||||  |||||||||||||||||||| |||| ||||||||||||||||||    
T  51039351 aatatggtgatatataaaattgttgatggatttattggtaattacaactttaatttagtgtaattcttgcttttcgt 51039427  T

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