View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21138_low_8 (Length: 239)

Name: NF21138_low_8
Description: NF21138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21138_low_8
NF21138_low_8
[»] chr4 (6 HSPs)
chr4 (1-116)||(21204751-21204867)
chr4 (32-113)||(27269856-27269938)
chr4 (74-119)||(19477511-19477556)
chr4 (70-115)||(32293473-32293518)
chr4 (70-116)||(8815569-8815615)
chr4 (70-116)||(22294769-22294815)
[»] chr8 (2 HSPs)
chr8 (30-116)||(21523991-21524078)
chr8 (70-116)||(43776436-43776482)
[»] chr6 (4 HSPs)
chr6 (70-116)||(2189510-2189556)
chr6 (30-119)||(10944273-10944363)
chr6 (88-116)||(14001960-14001988)
chr6 (41-116)||(14215870-14215946)
[»] chr3 (2 HSPs)
chr3 (70-116)||(3694563-3694609)
chr3 (70-119)||(25408979-25409029)
[»] scaffold0777 (1 HSPs)
scaffold0777 (70-119)||(1099-1148)
[»] chr7 (6 HSPs)
chr7 (74-115)||(35516914-35516955)
chr7 (70-116)||(36156042-36156088)
chr7 (70-116)||(43026163-43026209)
chr7 (44-115)||(27076746-27076818)
chr7 (44-115)||(27201483-27201555)
chr7 (88-120)||(29374551-29374583)
[»] chr5 (4 HSPs)
chr5 (70-119)||(34177922-34177971)
chr5 (42-116)||(39840080-39840155)
chr5 (77-115)||(804234-804272)
chr5 (69-116)||(8488267-8488315)
[»] chr2 (4 HSPs)
chr2 (45-116)||(35590396-35590468)
chr2 (70-116)||(41300524-41300570)
chr2 (71-116)||(45130947-45130992)
chr2 (70-102)||(13074044-13074076)
[»] chr1 (2 HSPs)
chr1 (70-116)||(25530248-25530294)
chr1 (70-116)||(52251560-52251606)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21204867 - 21204751
Alignment:
Q  1 tttctttagttactgctttttgtttttactgtaaatattgttgtgactctggtgtttctctctgacata-cttgtgctaggaaggcttttttgatgtggt 99  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  21204867 tttctttagttaatgctttttgttgttactgtaaatactgttgtgactctagtgtttctctctgacataccttgtgctagggaggattttttgatgtggt 21204768  T
Q  100 aatatatttcattttag 116  Q
    |||||||||||||||||    
T  21204767 aatatatttcattttag 21204751  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 27269938 - 27269856
Alignment:
Q  32 taaatattgttgtgactctggtgtttctctctgacata-cttgtgctaggaaggcttttttgatgtggtaatatatttcattt 113  Q
    |||||| |||||||||||| ||||||||||||| |||| ||| | ||||| ||   ||||||||||||| |||||||||||||    
T  27269938 taaatactgttgtgactctagtgtttctctctggcataccttatactagggagaactttttgatgtggtgatatatttcattt 27269856  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 19477511 - 19477556
Alignment:
Q  74 tgctaggaaggcttttttgatgtggtaatatatttcattttagtct 119  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||    
T  19477511 tgctaggaaggactttttgttgtggtaatatatttcattttagtct 19477556  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 32293518 - 32293473
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcatttta 115  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||    
T  32293518 cttgtgttaggaagacttttttgatatggtaatatatttcatttta 32293473  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 8815569 - 8815615
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||||| | |||| | |||||||||||||||||||||    
T  8815569 cttgtgctaggaaggcctatttgttatggtaatatatttcattttag 8815615  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 22294769 - 22294815
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||| | ||||||||||||||||||| || |||||||    
T  22294769 cttgtgctaggaagccctttttgatgtggtaatataatttattttag 22294815  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 21523991 - 21524078
Alignment:
Q  30 tgtaaatattgttgtgactctggtgtttctctctgacata-cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||| ||||||||||||||| | ||||||||||| |||||| ||||||||   |||||||||||||||||| ||||||||||    
T  21523991 tgtaaatatttttgtgactctggtgtctttctctgacataccttgtgttaggaaggaccttttgatgtggtaatataattcattttag 21524078  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 43776436 - 43776482
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||||||||||||  ||||| |||||||||||| ||||||||||    
T  43776436 cttgtgctaggaaggccattttgttgtggtaatataattcattttag 43776482  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 2189556 - 2189510
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||| | || |||||||||||||||||||||||||||    
T  2189556 cttgtgctaggaagaccttgttgatgtggtaatatatttcattttag 2189510  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 10944273 - 10944363
Alignment:
Q  30 tgtaaatattgttgtgactctggtgtttctctctgacatac-ttgtgctaggaaggcttttttgatgtggtaatatatttcattttagtct 119  Q
    |||||||| |||||||||| |||||||  |||||  ||||| |||||||||| |||   |||||  |||||||||||| ||||||||||||    
T  10944273 tgtaaatactgttgtgactttggtgttcttctctagcataccttgtgctagggaggaacttttgcagtggtaatatatctcattttagtct 10944363  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 14001960 - 14001988
Alignment:
Q  88 ttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||||||||||||||||||    
T  14001960 ttttgatgtggtaatatatttcattttag 14001988  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 14215946 - 14215870
Alignment:
Q  41 ttgtgactctggtgtttctctctgacatac-ttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||||||||||| | ||||||  |||| |||||||||| | |   |||||||||||||||||| ||||||||||    
T  14215946 ttgtgactctggtgtctttctctggtataccttgtgctaggcatgaccttttgatgtggtaatataattcattttag 14215870  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 3694609 - 3694563
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||| | || |||||||||||||||||||||||||||    
T  3694609 cttgtgctaggaagaccttattgatgtggtaatatatttcattttag 3694563  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 25408979 - 25409029
Alignment:
Q  70 cttgtgctaggaaggc-ttttttgatgtggtaatatatttcattttagtct 119  Q
    ||||||| |||||||| ||||||| |||| |||||||||||||||||||||    
T  25408979 cttgtgcaaggaaggccttttttgttgtgataatatatttcattttagtct 25409029  T

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Target: scaffold0777 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 1099 - 1148
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttagtct 119  Q
    |||||||||||||||| || |||| || ||||||||||||||||||||||    
T  1099 cttgtgctaggaaggccttgttgacgtagtaatatatttcattttagtct 1148  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 35516914 - 35516955
Alignment:
Q  74 tgctaggaaggcttttttgatgtggtaatatatttcatttta 115  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  35516914 tgctaggaagacttttttgatgtgataatatatttcatttta 35516955  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 36156088 - 36156042
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||    
T  36156088 cttgtgctaagaaggtcttgttgatgtggtaatatatttcattttag 36156042  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 43026209 - 43026163
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||||    
T  43026209 cttgtgctaggaagaagtttttgatgtggtaatataattcattttag 43026163  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 27076746 - 27076818
Alignment:
Q  44 tgactctggtgtttctctctgacatac-ttgtgctaggaaggcttttttgatgtggtaatatatttcatttta 115  Q
    |||||| |||| ||||| || |||||| ||||| |||||||  |||||| ||||||||||||| |||||||||    
T  27076746 tgactcaggtgattctccctaacataccttgtgttaggaagaattttttaatgtggtaatataattcatttta 27076818  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 27201555 - 27201483
Alignment:
Q  44 tgactctggtgtttctctctgacatac-ttgtgctaggaaggcttttttgatgtggtaatatatttcatttta 115  Q
    |||||| |||| ||||| || |||||| ||||| |||||||  |||||| ||||||||||||| |||||||||    
T  27201555 tgactcaggtgattctccctaacataccttgtgttaggaagaattttttaatgtggtaatataattcatttta 27201483  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 29374583 - 29374551
Alignment:
Q  88 ttttgatgtggtaatatatttcattttagtctt 120  Q
    |||||||||||||||||| ||||||||||||||    
T  29374583 ttttgatgtggtaatataattcattttagtctt 29374551  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 34177922 - 34177971
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttagtct 119  Q
    |||||||||||||||| |||| | |||||||||||| |||||||||||||    
T  34177922 cttgtgctaggaaggccttttcgttgtggtaatatacttcattttagtct 34177971  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 39840080 - 39840155
Alignment:
Q  42 tgtgactctggtgtttctctctgacatac-ttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||| | |||||| ||||| |||||||||| |||   |||||||||||||||||| ||| ||||||    
T  39840080 tgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttag 39840155  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 804272 - 804234
Alignment:
Q  77 taggaaggcttttttgatgtggtaatatatttcatttta 115  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  804272 taggagggcctttttgatgtggtaatatatttcatttta 804234  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 8488267 - 8488315
Alignment:
Q  69 acttgtgctaggaaggct-tttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  8488267 acttgtgctaggaaggccatttttgttgtggtaatatattgcattttag 8488315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 35590396 - 35590468
Alignment:
Q  45 gactctggtgtttctctctgacatac-ttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||||||||| ||||| |||||| |||  |  | |||||||||||||||||| ||||||||||    
T  35590396 gactctggtgtttctctctggcataccttgtgcaaggttgaatcttttgatgtggtaatataattcattttag 35590468  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 41300570 - 41300524
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||||||| ||| | |||||||||||||||||| ||||||||||    
T  41300570 cttgtgctagggaggatcttttgatgtggtaatataattcattttag 41300524  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 45130992 - 45130947
Alignment:
Q  71 ttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  45130992 ttgtgctgggaaggactttttgatgtggtaatataattcattttag 45130947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 13074076 - 13074044
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaat 102  Q
    |||||||||||||||| ||||||||||||||||    
T  13074076 cttgtgctaggaaggcctttttgatgtggtaat 13074044  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 25530248 - 25530294
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    |||||||||||||| |  ||||||| |||||||||||||||||||||    
T  25530248 cttgtgctaggaagaccattttgatttggtaatatatttcattttag 25530294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 52251560 - 52251606
Alignment:
Q  70 cttgtgctaggaaggcttttttgatgtggtaatatatttcattttag 116  Q
    ||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  52251560 cttgtgctaggaaggccgttttgttgtgggaatatatttcattttag 52251606  T

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