View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21139_high_2 (Length: 453)
Name: NF21139_high_2
Description: NF21139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21139_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 9786616 - 9787048
Alignment:
| Q |
18 |
ttaagatatccaatgcatggagcaagagcaccagttactgttccacatgagattgcagcttcagccataggtgcaacaatgatgcacatcatcaaaacaa |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9786616 |
ttaagatatccaatgcatggagcaagagaaccagttactgttccacatgtgattgcagcttcagccataggtgcaacaatgatgcacatcatcaaaagaa |
9786715 |
T |
|
| Q |
118 |
cacatgctaccttaatgcttgccattgtttttctttgtaaagagaaatgtgtctttgtttttctaggtatgtttgattggtgagtgtagagtggaagagg |
217 |
Q |
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||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9786716 |
cacatgctaccttcatgcttgccattatatttctttgtaaagagaaatgtgtctttgtttttctaggtttgtttgattggtgagtgtagagtggaagagg |
9786815 |
T |
|
| Q |
218 |
gtgggggtttatatagnnnnnnngatgaggtgggaattggaatttagagaagatgggaagatgagcagagtgatggcgttggcgtagtgcatgtagctct |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9786816 |
gtgggggtttatatagaaaaaaagatgaggtgggaattggaatttagagaagatgggaagatgagcagagtgatggcgttggcgtagtgcatgtagctct |
9786915 |
T |
|
| Q |
318 |
gtcggtattggtggtagttgaaggctgtattaaatgaggtatggtactattgtctacaattattgaacacttgtctcgctatcattgattttaatttatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9786916 |
gtcggtattggtggtagttgaaggctgtattaaatgaggtatggtactattgtctacaattattgaacacttgtctcactatcattgattttaatttatt |
9787015 |
T |
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| Q |
418 |
actacggttgcagttagatttggtgataatatt |
450 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
9787016 |
accacggttgcagttagatttggtgataatatt |
9787048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 9832059 - 9831757
Alignment:
| Q |
18 |
ttaagatatccaatgcatggagcaagagcaccagttactgttccacatgagattgcagcttcagccataggtgcaacaatgatgcacatcatcaaaacaa |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9832059 |
ttaagatatccaatgcatggaccaagagcactagttactgttccacatgagattgcagcatctgccataggtgcaacaatcatgcacatcatcaaaacaa |
9831960 |
T |
|
| Q |
118 |
cacatgctaccttaatgcttgccattgtttttc------------tttgtaaagagaaatgtgtctttgtttttctaggtatgtttgattggtgagtgta |
205 |
Q |
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||||||||||||| |||||||||||| |||| | |||||||||| |||||| ||||||||||||| | |||||| || |||||| || |
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| T |
9831959 |
cacatgctaccttcatgcttgccatttttttccttaaaataaaattttgtaaagataaatgtttctttgtttttctttggttgtttgttttgtgagtata |
9831860 |
T |
|
| Q |
206 |
gagtggaagagggtgggggtttatatagnnnnnnngatgaggtgggaattggaatttagagaagatgggaagatgagcagagtgatggcgttggcgtagt |
305 |
Q |
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|||| |||||||||| ||||||||||| |||||||||||| ||||||||| |||||| |||||||||||||| ||||||||| || || |||| |
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| T |
9831859 |
-agtgtaagagggtggaggtttatatagaaaaaaagatgaggtgggatttggaatttggagaaggtgggaagatgagcatagtgatggcatttgcttagt |
9831761 |
T |
|
| Q |
306 |
gcat |
309 |
Q |
| |
|
|||| |
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|
| T |
9831760 |
gcat |
9831757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 9812518 - 9812652
Alignment:
| Q |
18 |
ttaagatatccaatgcatggagcaagagcaccagttactgttccacatgagattgcagcttcagccataggtgcaacaatgatgcacatcatcaaaacaa |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9812518 |
ttaagatatccaatgcatggaccaagagcactagttactgttccacatgagattgcagcatctgccataggtgcaacaatcatgcacatcatcaaaacaa |
9812617 |
T |
|
| Q |
118 |
cacatgctaccttaatgcttgccattgtttttctt |
152 |
Q |
| |
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||||||||| ||| ||| ||||||||||||||||| |
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|
| T |
9812618 |
cacatgctatcttcatgtttgccattgtttttctt |
9812652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 9799247 - 9799359
Alignment:
| Q |
169 |
tctttgtttttctaggtatgtttgattggtgagtgtagagtggaagagggtgggggtttatatagnnnnnnngatgaggtgggaattggaatttagagaa |
268 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
9799247 |
tctttgtttttctttgt-tgtttgtttggtgagtgtaaagtgtaagagggtggaggtttatatag-aagaaagatgaggtgggatttggaatttggagaa |
9799344 |
T |
|
| Q |
269 |
gatgggaagatgagc |
283 |
Q |
| |
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| || |||||||||| |
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|
| T |
9799345 |
ggtgcgaagatgagc |
9799359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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