View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21139_high_4 (Length: 290)
Name: NF21139_high_4
Description: NF21139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21139_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 2918951 - 2918706
Alignment:
| Q |
15 |
aatatgaaggataaaaaagaaaatcgattacactggaaactgtagtgtataaagatgattcataaagacttaaaccttatgcaaaacatgattaggatcc |
114 |
Q |
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| T |
2918951 |
aatatgaagcttaaaaaagaaaatcgattacactggaaactgtactgtataaagatgattcagaaagactcaaaccttatgcaaaacatgattaggatcc |
2918852 |
T |
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| Q |
115 |
tcacatgttgaataaaacacgtagaaataacgtggaacaccttacatccttaaaatctaaataggagagagttttggaatttgaaaagaaaatggaaaaa |
214 |
Q |
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| T |
2918851 |
tcacatgttgaataaaacacgtagaaataatgtggaacacctgacatccttaaaatctaaatagaagagagttttggaatttgaaaagaaaatggaaaaa |
2918752 |
T |
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| Q |
215 |
cgacggttaagggttgaaattttaattaaacttgaaataaaaataagagg |
264 |
Q |
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| T |
2918751 |
cgatggttaagggttgaaatt----ttaaacttgaaataaaaataagagg |
2918706 |
T |
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