View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2113_high_11 (Length: 313)

Name: NF2113_high_11
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2113_high_11
NF2113_high_11
[»] chr7 (16 HSPs)
chr7 (192-260)||(8389046-8389114)
chr7 (192-260)||(31072275-31072343)
chr7 (192-260)||(1623816-1623884)
chr7 (194-244)||(15678517-15678567)
chr7 (186-260)||(4540145-4540218)
chr7 (194-244)||(12383091-12383141)
chr7 (194-260)||(18667650-18667716)
chr7 (194-260)||(20394539-20394605)
chr7 (194-260)||(23305931-23305997)
chr7 (195-260)||(3123517-3123584)
chr7 (194-260)||(6188836-6188903)
chr7 (194-260)||(6195352-6195419)
chr7 (194-260)||(8113257-8113324)
chr7 (195-260)||(48239056-48239122)
chr7 (195-260)||(13754399-13754464)
chr7 (197-260)||(8070179-8070243)
[»] chr2 (19 HSPs)
chr2 (192-260)||(19686077-19686145)
chr2 (193-260)||(33014945-33015012)
chr2 (194-260)||(7444195-7444261)
chr2 (194-260)||(22575737-22575803)
chr2 (194-260)||(27861591-27861657)
chr2 (192-260)||(44313794-44313862)
chr2 (194-242)||(41302044-41302092)
chr2 (194-244)||(18580967-18581017)
chr2 (194-244)||(38698792-38698842)
chr2 (195-251)||(30387362-30387419)
chr2 (197-242)||(38565828-38565873)
chr2 (194-260)||(2554341-2554408)
chr2 (194-260)||(41825716-41825783)
chr2 (195-260)||(25622104-25622170)
chr2 (194-260)||(29303772-29303838)
chr2 (196-260)||(14904694-14904759)
chr2 (194-251)||(31548613-31548671)
chr2 (196-260)||(18780604-18780669)
chr2 (206-250)||(9913488-9913532)
[»] chr1 (20 HSPs)
chr1 (192-260)||(48999687-48999755)
chr1 (194-260)||(8737654-8737720)
chr1 (194-260)||(21906664-21906730)
chr1 (187-260)||(22070787-22070859)
chr1 (192-260)||(26465349-26465418)
chr1 (192-260)||(48596101-48596169)
chr1 (193-260)||(5049739-5049806)
chr1 (197-260)||(17967080-17967143)
chr1 (192-260)||(27430548-27430617)
chr1 (194-260)||(23663862-23663928)
chr1 (195-260)||(25095453-25095518)
chr1 (193-260)||(34306996-34307063)
chr1 (194-244)||(9371558-9371608)
chr1 (194-241)||(32175704-32175751)
chr1 (194-260)||(9023713-9023779)
chr1 (194-235)||(33048692-33048733)
chr1 (194-260)||(44310933-44310999)
chr1 (195-260)||(47396853-47396919)
chr1 (189-241)||(1345790-1345842)
chr1 (194-260)||(36297294-36297361)
[»] scaffold0093 (1 HSPs)
scaffold0093 (193-259)||(51133-51199)
[»] chr6 (16 HSPs)
chr6 (187-260)||(1603656-1603729)
chr6 (192-260)||(34043829-34043897)
chr6 (192-260)||(21442867-21442935)
chr6 (194-260)||(1423240-1423305)
chr6 (192-260)||(22011867-22011935)
chr6 (194-260)||(18675638-18675703)
chr6 (194-260)||(20990724-20990790)
chr6 (194-244)||(31473859-31473909)
chr6 (196-237)||(26817919-26817960)
chr6 (194-260)||(13758336-13758403)
chr6 (194-260)||(15060427-15060494)
chr6 (194-260)||(31130217-31130284)
chr6 (194-260)||(15953770-15953836)
chr6 (194-231)||(3228817-3228854)
chr6 (194-250)||(4090321-4090377)
chr6 (195-235)||(18617311-18617351)
[»] chr5 (14 HSPs)
chr5 (192-260)||(2677251-2677319)
chr5 (192-260)||(13382351-13382419)
chr5 (192-260)||(23963134-23963202)
chr5 (194-260)||(42879878-42879944)
chr5 (194-260)||(5578362-5578428)
chr5 (194-260)||(9409315-9409381)
chr5 (194-260)||(13490664-13490730)
chr5 (194-260)||(18889350-18889415)
chr5 (194-260)||(39537169-39537234)
chr5 (194-244)||(41871403-41871453)
chr5 (195-260)||(43170778-43170844)
chr5 (194-242)||(38915385-38915433)
chr5 (194-260)||(6769106-6769173)
chr5 (200-248)||(13825720-13825769)
[»] chr4 (17 HSPs)
chr4 (192-260)||(10094771-10094839)
chr4 (192-260)||(28803657-28803725)
chr4 (194-259)||(7413496-7413561)
chr4 (194-259)||(7459577-7459642)
chr4 (195-260)||(39480007-39480072)
chr4 (194-244)||(14032331-14032381)
chr4 (194-256)||(24610836-24610898)
chr4 (194-260)||(36214003-36214068)
chr4 (194-251)||(23935648-23935706)
chr4 (197-260)||(51890304-51890368)
chr4 (197-260)||(51890577-51890641)
chr4 (197-240)||(14109947-14109990)
chr4 (194-260)||(14191743-14191810)
chr4 (194-260)||(28142877-28142944)
chr4 (203-241)||(51315449-51315487)
chr4 (194-235)||(41508856-41508897)
chr4 (194-235)||(49243588-49243629)
[»] chr3 (16 HSPs)
chr3 (192-260)||(10993913-10993981)
chr3 (192-260)||(15761143-15761211)
chr3 (192-260)||(19157378-19157446)
chr3 (192-260)||(25071927-25071994)
chr3 (192-260)||(27941267-27941335)
chr3 (195-260)||(33100186-33100251)
chr3 (194-244)||(1418212-1418262)
chr3 (194-244)||(36641825-36641875)
chr3 (196-260)||(40145761-40145824)
chr3 (194-244)||(22918432-22918482)
chr3 (194-244)||(30378905-30378955)
chr3 (194-251)||(52448436-52448493)
chr3 (194-242)||(11830152-11830200)
chr3 (194-260)||(6024183-6024250)
chr3 (204-260)||(16876635-16876692)
chr3 (194-242)||(1425060-1425108)
[»] chr8 (14 HSPs)
chr8 (192-260)||(45117739-45117808)
chr8 (192-260)||(1981869-1981937)
chr8 (193-260)||(3762967-3763035)
chr8 (193-252)||(31597815-31597874)
chr8 (194-260)||(7972736-7972802)
chr8 (195-260)||(16730013-16730079)
chr8 (194-260)||(40971710-40971777)
chr8 (194-260)||(7263406-7263472)
chr8 (197-242)||(9137991-9138036)
chr8 (194-260)||(9381594-9381660)
chr8 (194-260)||(2878634-2878702)
chr8 (195-256)||(15663431-15663492)
chr8 (195-236)||(35824427-35824468)
chr8 (196-236)||(23231752-23231792)
[»] scaffold0311 (1 HSPs)
scaffold0311 (194-244)||(4575-4625)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 8389046 - 8389114
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8389046 gcccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatgcatcataa 8389114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 31072275 - 31072343
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31072275 gcccgttcctagagttttatgggccttaggcataatatgaaaaaagggcccttacataatgcatcataa 31072343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 1623884 - 1623816
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  1623884 gcccgttcctagagttttacggaccttaggcataatatgaaaaaagggcctttacataatgcatcataa 1623816  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 15678517 - 15678567
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15678517 ccgttcctagagttttacgggtcttaggcatagtatgaaaaaagggccctt 15678567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 4540218 - 4540145
Alignment:
Q  186 ttacatgcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||| |||||||||||||||||| | ||  ||||||||||||||| |||||||||||||||||||| |||||||    
T  4540218 ttacaggcccgttcctagagtttttcaggctttaggcataatatga-aaaagggcccttacataatgtatcataa 4540145  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 12383141 - 12383091
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  12383141 ccgttcctagagttttacgggccttaggcatagtatgaaaaaagggccctt 12383091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 18667716 - 18667650
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||| |||||||||| |||||||||||||| |||| ||||| |||||||||| ||| ||||    
T  18667716 ccgttcctagtgttttacgggccttaggcataatataaaaatagggctcttacataatacattataa 18667650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 20394539 - 20394605
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||| || ||||||||||| |||| ||||||||| |||||||| |||||||||||| ||||||||    
T  20394539 ccgttcttaaagttttacgggccttatgcataatataaaaaaaggtcccttacataatacatcataa 20394605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 23305997 - 23305931
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||| |||||| |||||||||||||| | ||||||||||| |||||||||||  |||||||    
T  23305997 ccgttcctagcgttttaagggtcttaggcatagtttgaaaaaagggtccttacataatatatcataa 23305931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 3123517 - 3123584
Alignment:
Q  195 cgttcctagagttttacggg-tcttaggcataatatgaaaaaagggc-ccttacataatgcatcataa 260  Q
    |||||||||||||||||||| | | | ||||||||||| |||||||| ||||||||||| ||||||||    
T  3123517 cgttcctagagttttacgggctttaaagcataatatgagaaaagggctccttacataatacatcataa 3123584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 6188836 - 6188903
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||| |||| | ||| |||||||||| | |||||||| ||||||||||||||| ||||||||    
T  6188836 ccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataa 6188903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 6195352 - 6195419
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||| |||| | ||| |||||||||| | |||||||| ||||||||||||||| ||||||||    
T  6195352 ccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataa 6195419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 8113257 - 8113324
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccc-ttacataatgcatcataa 260  Q
    ||||||||||||||||| ||||||||| |||||||||| |||| | ||| ||||||||| | ||||||    
T  8113257 ccgttcctagagttttaggggtcttagacataatatgagaaaatgacccattacataatacgtcataa 8113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 48239122 - 48239056
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    ||||||||| |||| | ||| |||||||||| | |||||||| ||||||||||||||| ||||||||    
T  48239122 cgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataa 48239056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 13754464 - 13754399
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||| |||| |||||||||| ||||  |||||||| |||| |||||||||||||||| ||| ||||    
T  13754464 cgtttctagcgttttacgggccttaaacataatataaaaatagggcccttacataatacattataa 13754399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 8070243 - 8070179
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    ||||||| |||| | ||| |||||||||| | |||||||| ||||||||||||||| ||||||||    
T  8070243 ttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataa 8070179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 19686145 - 19686077
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19686145 gcccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatgcatcataa 19686077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 33014945 - 33015012
Alignment:
Q  193 cccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33014945 cccgttcctagagttttacgggtcttatgcataatatgaaaaaagggcccttacataatgcatcataa 33015012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 7444261 - 7444195
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7444261 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatacatcataa 7444195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 22575737 - 22575803
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  22575737 ccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatagatcataa 22575803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 27861591 - 27861657
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  27861591 ccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacaaaatacatcataa 27861657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 44313794 - 44313862
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||| | ||| ||||||||||||||    
T  44313794 gcccgttcctagagttttacgggccttagacataatataaaaaaagggtctttatataatgcatcataa 44313862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 41302044 - 41302092
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccc 242  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  41302044 ccgttcctagagttttacgggccttaggcataatatgagaaaagggccc 41302092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 18580967 - 18581017
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  18580967 ccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccctt 18581017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 38698842 - 38698792
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  38698842 ccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccctt 38698792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 30387419 - 30387362
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatga-aaaaagggcccttacataat 251  Q
    ||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||||    
T  30387419 cgttcctagagtttttcgggtcttaggcataatatgagaaaatggccccttacataat 30387362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 38565828 - 38565873
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaagggccc 242  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  38565828 ttcctagagttttacgggtcttaggcataatatgagaaaagagccc 38565873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 2554408 - 2554341
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagg-gcccttacataatgcatcataa 260  Q
    |||||||||| |||||||||  |||||||||||||||||||||||  |||||||||||| ||| ||||    
T  2554408 ccgttcctagcgttttacggaccttaggcataatatgaaaaaaggaccccttacataatacattataa 2554341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 41825716 - 41825783
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagg-gcccttacataatgcatcataa 260  Q
    |||||||||| |||||||||  |||||||||||||||||||||||  |||||||||||| ||| ||||    
T  41825716 ccgttcctagcgttttacggaccttaggcataatatgaaaaaaggaccccttacataatacattataa 41825783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 25622170 - 25622104
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaagggc-ccttacataatgcatcataa 260  Q
    |||||||||||||||| |||||||| ||||||||||| |||| | | ||||||||||| ||||||||    
T  25622170 cgttcctagagttttaggggtcttaagcataatatgagaaaatgtctccttacataatacatcataa 25622104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 29303838 - 29303772
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||| |||| | ||| |||||||||| | ||| ||||||||||||||||||| ||||||||    
T  29303838 ccgttcctagcgtttaaggggccttaggcatagtttgacaaaagggcccttacataatacatcataa 29303772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 14904759 - 14904694
Alignment:
Q  196 gttcctagagttttacgggtcttaggcataatatga-aaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||| ||| |||| ||||||||||| ||||| | |||||||||||| ||||||||    
T  14904759 gttcctagagttttaggggccttaagcataatatgagaaaaaagccccttacataatacatcataa 14904694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 31548613 - 31548671
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaaggg-cccttacataat 251  Q
    ||||| |||||||||||| |||||||| | |||||||| ||||||| ||||||||||||    
T  31548613 ccgtttctagagttttacaggtcttagacttaatatgagaaaagggtcccttacataat 31548671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 18780604 - 18780669
Alignment:
Q  196 gttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||| |||||| ||| |||||||||| | |||||||| |||||||||||||||  |||||||    
T  18780604 gttcctagcgttttaagggccttaggcatagtttgaaaaaatgggcccttacataatatatcataa 18780669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 9913532 - 9913488
Alignment:
Q  206 ttttacgggtcttaggcataatatgaaaaaagggcccttacataa 250  Q
    |||||||||||||||||||| || ||||||||| || ||||||||    
T  9913532 ttttacgggtcttaggcatagtaagaaaaaaggccctttacataa 9913488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 48999755 - 48999687
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48999755 gcccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatgcatcataa 48999687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 8737654 - 8737720
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  8737654 ccgtttctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatacatcataa 8737720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 21906730 - 21906664
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21906730 ccgttcctagaattttatgggccttaggcataatatgaaaaaagggcccttacataatgcatcataa 21906664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 22070859 - 22070787
Alignment:
Q  187 tacatgcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  22070859 tacaggcccgttcctagagttttacgggccttaggcattatatg-aaaaagggcccttacataatgcatcataa 22070787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 26465418 - 26465349
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaa-aaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  26465418 gcccgttcctagagttttacgggccttaggcataatatgaaaaaaagggcctttacataatgcatcataa 26465349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 48596101 - 48596169
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||| ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  48596101 gcccggtcctagagttttacgggtcttaggcataatatagaaaaagggcccttatataatgcatcataa 48596169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 5049806 - 5049739
Alignment:
Q  193 cccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  5049806 cccgttcctagagttttacgggccctaggcataatatgaaaaaaaggcccttatataatgcatcataa 5049739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 17967080 - 17967143
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  17967080 ttcctagagttttacgggccttaggcataatatgaaaaaaggatccttacataatgcatcataa 17967143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 27430548 - 27430617
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatg-aaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||    
T  27430548 gcccgttcctagagttttacaggccttaggcataatatgaaaaaaaaggcccttacataatgcatcataa 27430617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 23663862 - 23663928
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||||||    
T  23663862 ccgttcctagagttttacgggccttaggcataatatgaaaaaaggtccccaacataatacatcataa 23663928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 25095518 - 25095453
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |||| ||||||| ||||||||    
T  25095518 cgttcctagagttttacgggccttaggcataatatgaaagaaggtccctaacataatacatcataa 25095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 34306996 - 34307063
Alignment:
Q  193 cccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||| |||||||||||| || |||||||| |||||||||||| ||||||||||||||| |||||||    
T  34306996 cccgtttctagagttttacaggccttaggcacaatatgaaaaaaaggcccttacataatggatcataa 34307063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 9371558 - 9371608
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  9371558 ccgttcctaaagttttacgggtcttaggcatagtatgaaaaaagggccctt 9371608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 32175704 - 32175751
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcc 241  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  32175704 ccgttcctagagttttacgggtcttgggcatagtatgaaaaaagggcc 32175751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 9023779 - 9023713
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |  |||||||||||| ||||||||    
T  9023779 ccgttcctagagttttacggaccttaggcataatatgagaaaggaccccttacataatacatcataa 9023713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 33048692 - 33048733
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaa 235  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  33048692 ccgttcctagagttttacgggtcttaggcatagtatgaaaaa 33048733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 44310999 - 44310933
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||| |||| |||||||||||||| ||||||| ||| ||||||  ||||||||||| ||||||||    
T  44310999 ccgttcttagaattttacgggtcttaagcataatttgagaaaaggatccttacataatacatcataa 44310933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 47396853 - 47396919
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaag-ggcccttacataatgcatcataa 260  Q
    ||||||||||||||||  ||||||||||||||||||| |||||   |||||||||||| ||||||||    
T  47396853 cgttcctagagttttataggtcttaggcataatatgagaaaagaaccccttacataattcatcataa 47396919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 1345790 - 1345842
Alignment:
Q  189 catgcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcc 241  Q
    |||| ||||||||| |||||||| || |||||||||| |||||||||||||||    
T  1345790 catggccgttcctaaagttttacaggccttaggcatagtatgaaaaaagggcc 1345842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 36297361 - 36297294
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||| |||| | |||||||||||||| |  ||||||| ||||||||||||||| ||||||||    
T  36297361 ccgttcctagtgtttaaggggtcttaggcatagttcgaaaaaatgggcccttacataatacatcataa 36297294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 51199 - 51133
Alignment:
Q  193 cccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcata 259  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51199 cccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatgcatcata 51133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 1603729 - 1603656
Alignment:
Q  187 tacatgcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  1603729 tacaggcccgttcctagagttttacgggccttaggcataatataaaaaaagggcccttacataatgcatcataa 1603656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 34043897 - 34043829
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  34043897 gcccgttcctagagttttacgggccttacgcataatatgaaaaaagggcccttacataatgcatcataa 34043829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 21442935 - 21442867
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  21442935 gcccgttcctagagttttatgagtcttaggcataatatgaaaaaaggacccttatataatgcatcataa 21442867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 1423305 - 1423240
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||    
T  1423305 ccgttcctagagttttacgagccttaggcataatatga-aaaagggcccttacataatacatcataa 1423240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 22011867 - 22011935
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||| | ||| ||||||||||||||    
T  22011867 gcccgttcctagagttttacgggccttagacataatataaaaaaagggtctttatataatgcatcataa 22011935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 18675703 - 18675638
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||| ||||||||    
T  18675703 ccgttcctagagttttatgggccttaagcataatatga-aaaagggcccttacataatacatcataa 18675638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 20990790 - 20990724
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||| |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||||    
T  20990790 ccgttcctagcgttttacgggccttaggcataatataaaaatagggcccttacataatacattataa 20990724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 31473859 - 31473909
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  31473859 ccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccctt 31473909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 26817960 - 26817919
Alignment:
Q  196 gttcctagagttttacgggtcttaggcataatatgaaaaaag 237  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  26817960 gttcctatagttttacgggtcttaggcataatatgagaaaag 26817919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 13758336 - 13758403
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatga-aaaaagggcccttacataatgcatcataa 260  Q
    |||||| ||| ||||||| |||| |||||||||||||| ||||| | |||||||||||| ||||||||    
T  13758336 ccgttcatagcgttttacaggtcgtaggcataatatgagaaaaatgccccttacataatacatcataa 13758403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 15060494 - 15060427
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaaggg-cccttacataatgcatcataa 260  Q
    ||||||||| ||||||| ||| |||| ||||||||||| ||||||| |||||||| ||| ||||||||    
T  15060494 ccgttcctaaagttttatgggccttatgcataatatgagaaaagggtcccttacaaaatacatcataa 15060427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 31130284 - 31130217
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatga-aaaaagggcccttacataatgcatcataa 260  Q
    |||||| ||||||||||||| ||||||||||||||||| |||| || |||||| ||||| | ||||||    
T  31130284 ccgttcttagagttttacggatcttaggcataatatgagaaaatggtcccttatataatacgtcataa 31130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 15953770 - 15953836
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||  | |||| |||||||||| |||  |||||||| ||||| ||||||||    
T  15953770 ccgttcctagagttttacgaattttagacataatatgagaaataggcccttatataatacatcataa 15953836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 3228817 - 3228854
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatga 231  Q
    |||||||||||||||||||||||||||  |||||||||    
T  3228817 ccgttcctagagttttacgggtcttagatataatatga 3228854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 4090321 - 4090377
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataa 250  Q
    ||||||||||  ||||| ||||||||||||||  |||||||| || |||||||||||    
T  4090321 ccgttcctagcattttaggggtcttaggcatagaatgaaaaagggccccttacataa 4090377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 18617351 - 18617311
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaa 235  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  18617351 cgttcctagagttttacgggccttaggcatagcatgaaaaa 18617311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 2677319 - 2677251
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  2677319 gcccgttcctagagttttacgggccttaggcataatataaaaaaagggcccttacataatgcatcataa 2677251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 13382351 - 13382419
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  13382351 gcccgttcctagagttttacaggccttaggcataatatgaaaaaagggcccttacataatggatcataa 13382419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 23963202 - 23963134
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  23963202 gcccgttcctagagttttataggccttaggcataatatgaaaaaagggcccttacataatgcatcataa 23963134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 42879944 - 42879878
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  42879944 ccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatagatcataa 42879878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 5578362 - 5578428
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| ||||||||    
T  5578362 ccgttcctagagttttacgggccttaagcataatatgaaaaaaagtcccttacataatacatcataa 5578428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 9409315 - 9409381
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||  |||||||    
T  9409315 ccgttcctagagttttatgggtcttaggcataatatgaaaaaagggtcattacataatagatcataa 9409381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 13490730 - 13490664
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| ||||    
T  13490730 ccgtttctagagttttacaggccttaggcataatatgaaaaaagggccattacataatacattataa 13490664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 18889415 - 18889350
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||  || ||||||| |||||||||||| ||||||||||||||||||||||||    
T  18889415 ccgttcctagagttttatcggccttaggcgtaatatgaaaaa-gggcccttacataatgcatcataa 18889350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 39537169 - 39537234
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||| | || |||| |||||||||| |||||||||||||||||||| ||||||||    
T  39537169 ccgttcctagagttttgcaggccttatgcataatatg-aaaaagggcccttacataatacatcataa 39537234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 41871453 - 41871403
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||| ||||||||||||| ||||    
T  41871453 ccgttcctagagttttacaggccttaggcatagtatgaaaaaagggtcctt 41871403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 43170778 - 43170844
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||||||||| ||||| | | ||||||||||||||| || |||||||||||| ||||||||    
T  43170778 cgttcctagagttttaggggtcatggacataatatgaaaaaatggccccttacataatacatcataa 43170844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 38915385 - 38915433
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccc 242  Q
    |||||||||||||||||| || ||||||||| ||||||| |||||||||    
T  38915385 ccgttcctagagttttacaggccttaggcatgatatgaataaagggccc 38915433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 6769106 - 6769173
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagg-gcccttacataatgcatcataa 260  Q
    |||||||||||||||||| || |||| ||||||||||| ||||||  |||||| ||||| ||||||||    
T  6769106 ccgttcctagagttttacaggccttaagcataatatgagaaaaggtccccttagataatacatcataa 6769173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 13825720 - 13825769
Alignment:
Q  200 ctagagttttacgggtcttaggcataatatga-aaaaagggcccttacat 248  Q
    ||||||||||||||||| |||||||||||||| ||||| | |||||||||    
T  13825720 ctagagttttacgggtcctaggcataatatgagaaaaatgtcccttacat 13825769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 10094771 - 10094839
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  10094771 gcccgttcctagagttttacgggccttaggcataatatgaaaaaagggcccttatataatgcatcataa 10094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 28803657 - 28803725
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  28803657 gcccgttcctagagttttacgggccttaggcataatatgaaaaaatggcccttacataatgcatcataa 28803725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 7413496 - 7413561
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcata 259  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  7413496 ccgttcctagagttttacgggccttacgcataatatgaaaaaagggcccttacataatgcatcata 7413561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 7459577 - 7459642
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcata 259  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  7459577 ccgttcctagagttttacgggccttacgcataatatgaaaaaagggcccttacataatgcatcata 7459642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 39480007 - 39480072
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||  |||||||    
T  39480007 cgttcctagagttttatgggccttaggcataatatgaaaaaagggtccttacataatagatcataa 39480072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 14032331 - 14032381
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  14032331 ccgttcctagagttttacgggccttaggcatagtatgaaaaaagggccctt 14032381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 24610836 - 24610898
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatc 256  Q
    ||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||    
T  24610836 ccgttccgagagttttacaggttttaggcataatatgagaaaagggcccttacataatacatc 24610898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 36214068 - 36214003
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||  ||| | ||||||||||||||||||||||||||||||  |||||||    
T  36214068 ccgttcctagagttttacggacctt-gacataatatgaaaaaagggcccttacataatagatcataa 36214003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 23935648 - 23935706
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaaggg-cccttacataat 251  Q
    ||||||||||||||||||||| ||||| |||||||||| || |||| ||||||||||||    
T  23935648 ccgttcctagagttttacgggccttagacataatatgagaagagggccccttacataat 23935706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 51890304 - 51890368
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaaggg-cccttacataatgcatcataa 260  Q
    |||||||||||||| ||| ||| |||||||||||| ||||||| ||||||||||||  |||||||    
T  51890304 ttcctagagttttaggggccttgggcataatatgataaaagggccccttacataataaatcataa 51890368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 51890577 - 51890641
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaaggg-cccttacataatgcatcataa 260  Q
    |||||||||||||| ||| ||| |||||||||||| ||||||| ||||||||||||  |||||||    
T  51890577 ttcctagagttttaggggccttgggcataatatgataaaagggccccttacataataaatcataa 51890641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 14109990 - 14109947
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaagggc 240  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||    
T  14109990 ttcctagagttttacgggccttaggcatagtatcaaaaaagggc 14109947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 14191743 - 14191810
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||| |||||| ||| |||||||||| | |||||||| |||||||||||||||  |||||||    
T  14191743 ccgttcctagcgttttaagggccttaggcatagtttgaaaaaatgggcccttacataatatatcataa 14191810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 28142877 - 28142944
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||| |||| | ||| |||||||||| | |||||||| ||||||||||||||| ||||||||    
T  28142877 ccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataa 28142944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 51315487 - 51315449
Alignment:
Q  203 gagttttacgggtcttaggcataatatgaaaaaagggcc 241  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  51315487 gagttttacgggtgttaggcatagtatgaaaaaagggcc 51315449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 41508856 - 41508897
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaa 235  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  41508856 ccgttcctagagttttacagaccttaggcataatatgaaaaa 41508897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 49243629 - 49243588
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaa 235  Q
    ||||||||||||||||||||| |||||||||| ||| |||||    
T  49243629 ccgttcctagagttttacgggccttaggcatagtattaaaaa 49243588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 10993913 - 10993981
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  10993913 gcccgttcctagagttttacgggccttaggcataatatgaaaaaatggcccttacataatgcatcataa 10993981  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 15761211 - 15761143
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||    
T  15761211 gcccgttcctagagttttacagaccttaagcataatatgaaaaaagggcccttacataatgcatcataa 15761143  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 19157446 - 19157378
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  19157446 gcccgttcctagagttctacgggccttaagtataatatgaaaaaagggcccttacataatgcatcataa 19157378  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 25071994 - 25071927
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  25071994 gcccgttcctagagttttacgggccttaggcataatatgaaaaaa-ggtccttacataatgcatcataa 25071927  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 27941267 - 27941335
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||    
T  27941267 gcccgttcctagagttttacgggccttaggcataatatgaaaaaagggcctttctataatgcatcataa 27941335  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 33100186 - 33100251
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||| ||||    
T  33100186 cgttcctagagttttacaggtcttaggcataatatgagaaaaggggccttacataatacattataa 33100251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 1418212 - 1418262
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  1418212 ccgttcctagagttttacaggccttaggcataatatgaaaaaagggccctt 1418262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 36641875 - 36641825
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  36641875 ccgttcctagagttttacgggccttaggcatagtatgaaaaaagggccctt 36641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 40145824 - 40145761
Alignment:
Q  196 gttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||| ||||||||    
T  40145824 gttcctagagttttacaggtcttaggcataatatgagaaaatggccc-tacataatacatcataa 40145761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 22918482 - 22918432
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  22918482 ccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccctt 22918432  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 30378955 - 30378905
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  30378955 ccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccctt 30378905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 52448493 - 52448436
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataat 251  Q
    |||||||||| || ||||||| |||||||||||||| |||| ||||||||||||||||    
T  52448493 ccgttcctagcgtattacgggccttaggcataatataaaaatagggcccttacataat 52448436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 11830152 - 11830200
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccc 242  Q
    |||||||||||||||||| |  |||||||||||||||| ||||||||||    
T  11830152 ccgttcctagagttttacagaccttaggcataatatgagaaaagggccc 11830200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 6024183 - 6024250
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa-gggcccttacataatgcatcataa 260  Q
    |||||||||| |||||| ||| |||||||||| | |||||||| |||||||||||||||  |||||||    
T  6024183 ccgttcctagcgttttaagggccttaggcatagtttgaaaaaatgggcccttacataatatatcataa 6024250  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 16876635 - 16876692
Alignment:
Q  204 agttttacgggtcttaggcataatatgaaaaaaggg-cccttacataatgcatcataa 260  Q
    |||||||| || |||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  16876635 agttttacaggccttaggcataatatgagaaaagggccccatacataatacatcataa 16876692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 1425108 - 1425060
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccc 242  Q
    |||||||||||||||||  || ||||||||| ||||||| |||||||||    
T  1425108 ccgttcctagagttttataggccttaggcatgatatgaataaagggccc 1425060  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 45117808 - 45117739
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaa-aaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  45117808 gcccgttcctagagttttacgggccttaggcataatatgaaaaaaatggcccttacataatgcatcataa 45117739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 1981937 - 1981869
Alignment:
Q  192 gcccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||    
T  1981937 gcccgttcctagagttttacgggccttagacataatatgaaaaaagggtccttatataatgcatcataa 1981869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 3763035 - 3762967
Alignment:
Q  193 cccgttcctagagttttacgggtcttaggcataatatgaa-aaaagggcccttacataatgcatcataa 260  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  3763035 cccgtgcctagagttttacgggccttaggcataatatgaaaaaaaaggcccttacataatgcatcataa 3762967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 31597874 - 31597815
Alignment:
Q  193 cccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatg 252  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  31597874 cccgttcctagagttttacaggccttaggcataatatgaaaaaaggacccttacataatg 31597815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 7972736 - 7972802
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||  |||||||    
T  7972736 ccgttcctagagttttatgggccttaggcataatatgaaaaaagggtccttacataatagatcataa 7972802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 16730079 - 16730013
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaa-aaaagggcccttacataatgcatcataa 260  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||    
T  16730079 cgttcctagagttttacgggccttaggcataatatgaaaaaaaggtcccttacataatacatcataa 16730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 40971777 - 40971710
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaaggg-cccttacataatgcatcataa 260  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||    
T  40971777 ccgttcctagcattttacgggccttaggcataatatgaaaaaagggtcccttacataatacattataa 40971710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 7263406 - 7263472
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    |||||||||| |||||||||| |||| ||||||||| |||| |||||||||||||||| ||| ||||    
T  7263406 ccgttcctagcgttttacgggccttatgcataatataaaaatagggcccttacataatacattataa 7263472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 9138036 - 9137991
Alignment:
Q  197 ttcctagagttttacgggtcttaggcataatatgaaaaaagggccc 242  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||    
T  9138036 ttcctagaattttacgggccttaggcataatatgaaaaaagggccc 9137991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 9381594 - 9381660
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatcataa 260  Q
    ||||| ||||||||||| || ||||||||||||||||| |||| | ||| |||||||| ||||||||    
T  9381594 ccgtttctagagttttaaggatcttaggcataatatgagaaaatgacccctacataatacatcataa 9381660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 2878634 - 2878702
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaa--gggcccttacataatgcatcataa 260  Q
    |||||||||| |||||| |||||||||||||| | ||||||||  |||||||| ||||||  |||||||    
T  2878634 ccgttcctagcgttttaagggtcttaggcatagtttgaaaaaaatgggcccttgcataatatatcataa 2878702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 15663492 - 15663431
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatgcatc 256  Q
    |||||||| |||||||  || ||||| |||||||||| |||||| |||||||||||| ||||    
T  15663492 cgttcctatagttttagcgggcttagacataatatgagaaaaggccccttacataatacatc 15663431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 35824468 - 35824427
Alignment:
Q  195 cgttcctagagttttacgggtcttaggcataatatgaaaaaa 236  Q
    |||||||||||||||| |||||| ||||||||||||| ||||    
T  35824468 cgttcctagagttttaggggtctaaggcataatatgagaaaa 35824427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 23231752 - 23231792
Alignment:
Q  196 gttcctagagttttacgggtcttaggcataatatgaaaaaa 236  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  23231752 gttcctagagttttacaggtcttagacataatatgagaaaa 23231792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 4575 - 4625
Alignment:
Q  194 ccgttcctagagttttacgggtcttaggcataatatgaaaaaagggccctt 244  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  4575 ccgttcctagagttttacgggccttaggcatagtatgaaaaaagggtcctt 4625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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