View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2113_high_13 (Length: 287)
Name: NF2113_high_13
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_high_13 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 32 - 287
Target Start/End: Original strand, 5293182 - 5293437
Alignment:
| Q |
32 |
gaaaccattgtaaaatcaaaggaaaacccctataaattctttgtccactgttgtcctctttaatctttatcactaaagttaatacccaaagaaaattgac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5293182 |
gaaaccattgtaaaatcaaaggaaaacccctataaattctttgtccactgttgtcctctttaatctttatcactaaagttaataccgaaagaaaattgac |
5293281 |
T |
|
| Q |
132 |
acaataattcatcttaagatttcagattttcaatgatgtcaattttgatgattagtcgatacatactactgactttaaacggacctttacaagtaaatgg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5293282 |
acaataattcatcttaagatttcagattttcaacgatgttaattttgatgattagtcgatacatactactgactttaaacggacccttacaagtgaatgg |
5293381 |
T |
|
| Q |
232 |
ttcctcaaagtagtagtcattgagccggatgtcgagttttagaaaacctaaaaaat |
287 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5293382 |
ttcctcaaagtagtcgtcattgagccggatgccgagttttaaaaaacctaaaaaat |
5293437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University