View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2113_high_2 (Length: 839)

Name: NF2113_high_2
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2113_high_2
NF2113_high_2
[»] chr7 (8 HSPs)
chr7 (313-821)||(22781826-22782340)
chr7 (1-305)||(22782370-22782674)
chr7 (1-234)||(22778317-22778550)
chr7 (1-211)||(22774961-22775171)
chr7 (1-212)||(22765140-22765351)
chr7 (1-258)||(16085071-16085328)
chr7 (1-175)||(23278399-23278573)
chr7 (1-110)||(22770263-22770372)
[»] scaffold0370 (2 HSPs)
scaffold0370 (511-572)||(9028-9089)
scaffold0370 (511-572)||(14318-14379)
[»] chr6 (2 HSPs)
chr6 (652-709)||(17418456-17418513)
chr6 (653-706)||(3412674-3412727)
[»] chr2 (1 HSPs)
chr2 (515-590)||(8821847-8821922)
[»] chr1 (1 HSPs)
chr1 (513-594)||(2883066-2883147)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 313 - 821
Target Start/End: Complemental strand, 22782340 - 22781826
Alignment:
Q  313 atatttggtatgtcttgattttccccataaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaagcatatgtgttagttaca 412  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22782340 atatttggtatgtcttgatttcccccctaaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaaacatatgtgttagttaca 22782241  T
Q  413 atgcatgaaaaagtatt----taccatgtaactattgcgtactaggcaaacgacgtgatctgcaatgcttaatcattcatttgactagtttcgcaagtag 508  Q
    |||||||||||||||||    |||  |||||||||||||||||||  ||||||| |||||| |||||||||||| |||||| |||||||||| |||||||    
T  22782240 atgcatgaaaaagtattgacgtacggtgtaactattgcgtactagctaaacgacatgatctacaatgcttaatccttcattcgactagtttcacaagtag 22782141  T
Q  509 tccatgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggtctttggtgcatatc 608  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22782140 tgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatctattgacaaggtctttggtgcatatc 22782041  T
Q  609 tccaccagagagcgtgtccattgacaaggtccttgatgcatatctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaaga 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782040 tccaccagagagcgtgtccattgacaaggtccttgatgcatatctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaaga 22781941  T
Q  709 acatggtagataaccatgcatgtgaggagtcttgtagtggatagtgcgtg--nnnnnnnagggaggctagtgcgtgtactgatggtgcaacatacattgc 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| |||||||||| ||||||||||||||||||||||    
T  22781940 acatggtagataaccatgcatgtgaggagtcttgtagtggatagtgcgtgtttttttttagggagggtagtgcgtgtgctgatggtgcaacatacattgc 22781841  T
Q  807 atggaccgtcatagt 821  Q
    |||||||||||||||    
T  22781840 atggaccgtcatagt 22781826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 22782674 - 22782370
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782674 caaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 22782575  T
Q  101 caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782574 caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa 22782475  T
Q  201 caagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaagtgatggagattatgtggttttctccttttaataatgcatatt 300  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22782474 caagtaatagagaaataaaaaataaaagaaaatggacagtttgagaaaatgaggaaagggatggagattatgtggttttctccttttaataatgcatatt 22782375  T
Q  301 ttctg 305  Q
    |||||    
T  22782374 ttctg 22782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22778550 - 22778317
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    ||||| ||||||| ||||||| |||| ||||||||||||| || |||| |||||| |||||||||||||| ||| |||||||||||||||||||| | ||    
T  22778550 caaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccc 22778451  T
Q  101 caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||||||||    
T  22778450 caagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaaggaa 22778351  T
Q  201 caagtaatagagaaataaaaaatcaaagaaaatg 234  Q
    || ||||||| || |||| || ||||||||||||    
T  22778350 catgtaatagtgacataacaactcaaagaaaatg 22778317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 22775171 - 22774961
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    ||||||| |||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||||| | ||    
T  22775171 caaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatagatgctcaaaaccc 22775072  T
Q  101 caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa 200  Q
     |||||||||||||||||   || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |    
T  22775071 taagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggcaaagataaaggca 22774972  T
Q  201 caagtaataga 211  Q
     ||||||||||    
T  22774971 taagtaataga 22774961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 22765351 - 22765140
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||||| ||||||||||||||||| || |  |    
T  22765351 caaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatagatgctgaaaacac 22765252  T
Q  101 caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa 200  Q
    ||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| | |||||| || | ||||||||||    
T  22765251 caaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacatattgatgtggccaagataaaggaa 22765152  T
Q  201 caagtaatagag 212  Q
    ||  ||||||||    
T  22765151 cagttaatagag 22765140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 16085071 - 16085328
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    ||||||||||||||| |||||  ||| ||||| ||||| |||| |||| ||| ||||||||||||||||| ||| | ||||||||| ||||| || | ||    
T  16085071 caaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaaccc 16085170  T
Q  101 caagatgtaccagaaagtcaagtttggagattatttgaggcattcc-ttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaagga 199  Q
    ||| |||||||||||||||| || |||||||||||||||| | ||| ||||| |||| |  ||||||||||||| |||||||| | ||||||| ||||||    
T  16085171 caaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttgaaaagaatataggagggaaaaacaaacactgatatggcaaggagaaagga 16085270  T
Q  200 acaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaag 258  Q
    | | ||||||||  ||||| ||||  ||||||| | |||||||||||| | ||||||||    
T  16085271 atatgtaatagaagaataacaaatttaagaaaa-gaccagtttgagaatacgaggaaag 16085328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 23278399 - 23278573
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    ||||||||||||||||||||||||||  || |||||||||||| || |  ||||||| |||| ||| ||| ||| ||||||||||||||| |||| ||||    
T  23278399 caaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatgatagatgatcaaaatcc 23278498  T
Q  101 caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacaca 175  Q
    |||||||||| || || |||  | |||||| |||||||||||  ||||||| || ||| |||| |||||||||||    
T  23278499 caagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaaaacaca 23278573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22770372 - 22770263
Alignment:
Q  1 caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc 100  Q
    ||||||||||||||| ||||||| ||  |  ||||| |||||| ||||| | ||||| |||| | | | ||||  ||||||||||||||| |||| ||||    
T  22770372 caaataagaacaagaaaaggactacttttatatcatatttgttccctcagggtgatgctgaaatcggggcattagatcatatgatagatgatcaaaatcc 22770273  T
Q  101 caagatgtac 110  Q
    ||||||||||    
T  22770272 caagatgtac 22770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 572
Target Start/End: Original strand, 9028 - 9089
Alignment:
Q  511 catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct 572  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  9028 catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 572
Target Start/End: Original strand, 14318 - 14379
Alignment:
Q  511 catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct 572  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  14318 catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct 14379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 709
Target Start/End: Complemental strand, 17418513 - 17418456
Alignment:
Q  652 ctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaagaa 709  Q
    |||||| | ||| |||| ||||||| ||||| ||||||||||||||||||||||||||    
T  17418513 ctccacaaaagattgtgacttctccatcacttttcaaagtggttagtggtgctaagaa 17418456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 706
Target Start/End: Complemental strand, 3412727 - 3412674
Alignment:
Q  653 tccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaa 706  Q
    |||||||||||  |||||||||  ||||||| ||||||| ||||||||||||||    
T  3412727 tccaccagagatcgtgtcttctatctcactcctcaaagtagttagtggtgctaa 3412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 590
Target Start/End: Original strand, 8821847 - 8821922
Alignment:
Q  515 ataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgaca 590  Q
    |||||||||||  ||||||||| ||||||||| |  ||| |||||| | ||||||||| ||||||||| |||||||    
T  8821847 ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcctagacatgatctattgaca 8821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 594
Target Start/End: Complemental strand, 2883147 - 2883066
Alignment:
Q  513 tgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggt 594  Q
    ||||||||| |||  |||||||||  ||| | || |||||| |||| ||||||||||| | |||||||||| ||||||||||    
T  2883147 tgataactctcatggtagtgggatcatggtgtcctatgttcggctttaatctcctctcatcgacatgatccgttgacaaggt 2883066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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