View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_high_3 (Length: 771)
Name: NF2113_high_3
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 37980098 - 37979506
Alignment:
| Q |
1 |
cgatgaccctgaccgtgctttcatgtctgaatcggttagtctttgtttataaaaacaggtttatatatatcctttaaataaatctgttttctaataaatt |
100 |
Q |
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| T |
37980098 |
cgatgaccctgaccgtgctttcatgtctgaatcggttagtctttgtttataaaa-caggtttatat----cctttaaataaatcttttttctaataaatt |
37980004 |
T |
|
| Q |
101 |
gtactatcacatatatatcagatgaggaaaacagttaagaaacttgcaaggtgttttcctactgcaattgttactggaagatgcatagataaagtacact |
200 |
Q |
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| T |
37980003 |
gtactatcacatatatatcagatgaggaaaacagttaagaaacttgcaaggtgttttcctactgcaattgttactggaagatgcatagataaagtacact |
37979904 |
T |
|
| Q |
201 |
ttgactctttcaatttcttttctaccatt---ttttaatcttttgaaatgaaaataaattgattattattattttctacaaacaattttcaggtgtacaa |
297 |
Q |
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| T |
37979903 |
ttgactctttcaatttcttttctatcattattttttaatcttttgaaatgaaaataaattgattattattattttctacaaacaattttcaggtgtacaa |
37979804 |
T |
|
| Q |
298 |
ttttgtccgtttggatgaactatattatgctggaagtcatggcatggatattaaaggaccaacaaaagagtccaaatacaacaaagtgagtaaaatagct |
397 |
Q |
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| T |
37979803 |
ttttgtccgtttggatgaactatattatgctggaagtcatggcatggatattaaagggccaacaaaagagtccaaatacaacaaagtgagtaaaatagct |
37979704 |
T |
|
| Q |
398 |
ctagtgtannnnnnnaatttgacctatatagtgccgtggaataaggtcttaaattttttaaattctaaaaatgaattaacattgattatggtttgtagaa |
497 |
Q |
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| T |
37979703 |
ctagtgtatttttttaatttgacctatatagtgccgtggaataaggtcttcaattttttaaattctaaaaatgaattaacattgattatggtttgtagaa |
37979604 |
T |
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| Q |
498 |
taacaaagcagaggaagtactttttcaacctgccagtgaatttgttcccatgataaatgaggttagtcacactcacacaactcttcatgatattctag |
595 |
Q |
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| T |
37979603 |
taacaaagctgaggaagtactttttcaacctgccagagaatttgttcccatgataaatgaggttagtcacactcacacaactcttcatgaaattctag |
37979506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 620 - 757
Target Start/End: Complemental strand, 48878815 - 48878678
Alignment:
| Q |
620 |
attatagttgtgtagaatttgaaaatggaataatgatttataggataaaaaatatataagctaaattaagatggtattgaaacaccctacacattgagag |
719 |
Q |
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| T |
48878815 |
attatagttgtgtagaatttgaaaatggaataatgatttataggataaaaaatatataagctaaattaagatggtattgacacaccctacacattgagag |
48878716 |
T |
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| Q |
720 |
ttgagacctccatattcaatccttcatctggttcaatc |
757 |
Q |
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| T |
48878715 |
ttgagacctccatattcaatccttcatctggttcaatc |
48878678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 728
Target Start/End: Complemental strand, 48873605 - 48873560
Alignment:
| Q |
683 |
aattaagatggtattgaaacaccctacacattgagagttgagacct |
728 |
Q |
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| T |
48873605 |
aattaagatgatattggcacaccctacacattgagagttaagacct |
48873560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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