View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_high_7 (Length: 421)
Name: NF2113_high_7
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 3447307 - 3447699
Alignment:
| Q |
20 |
aatagaacaacaattgtcaatcatcaagttcaatttacaaaattcacataaaggaacctatttgttctttatttcacacacaaaaggaccaactcagcaa |
119 |
Q |
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| T |
3447307 |
aatagaacaacaattgtcaatcatcaagttcaatttacaaaattcacataaaggaacctttttgttctttatttcacacataaaaggaccaactcagcaa |
3447406 |
T |
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| Q |
120 |
ttcaaagcaaccaaatccaagacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaaatgcaggaacagtttaggacataaagtgcac |
219 |
Q |
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| T |
3447407 |
ttcaaagcaaccaaatccaagacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaaatgcaggaacagtttaggacataaagtgcac |
3447506 |
T |
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| Q |
220 |
tcaaaacaatcaaaattcagttgttatatcaaagcatcaagctacctg-ttcggttgaaatcaattttgaggatagcctatgtattagattttacatttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3447507 |
tcaaaacaatcaaaattcagttgttatatcaaagcatcaagctacctgtttcggttgaaatcaattttgaggatagcctaagtattagattttacatttt |
3447606 |
T |
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| Q |
319 |
agactcctcaaattgatttcaaccgaagtggattgtgtgatgcttttggataatccctgttttgtggcttagagacctctaaaatcacctttg |
411 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3447607 |
agactcgtcaaattgatctcaaccgaagtggattgtgtgatgcttttgaataatccatgttttgtggcttagagacctctaaaatcacctttg |
3447699 |
T |
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