View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_1 (Length: 1041)
Name: NF2113_low_1
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 908; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 30 - 1025
Target Start/End: Complemental strand, 55337457 - 55336466
Alignment:
| Q |
30 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
|
| Q |
130 |
atctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
228 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
55337258 |
T |
|
| Q |
229 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
328 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337257 |
tagtata-----tatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
55337163 |
T |
|
| Q |
329 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337162 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
55337063 |
T |
|
| Q |
429 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgnnnnnnntgtcatcaataggacacataatttacacc |
528 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55337062 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgaaaaaaatgtcatcaataggacacataatttacacc |
55336963 |
T |
|
| Q |
529 |
atgatttatccaattctacaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctg |
628 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55336962 |
atgatttatccaattcttcaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatcgg |
55336863 |
T |
|
| Q |
629 |
cgaacagcgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgct |
728 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55336862 |
cgaacagcgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaacttgtattgcagccgcaactggtgct |
55336763 |
T |
|
| Q |
729 |
gatggtgcacaactgttggctctgaaactatcatccactcttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagc |
828 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55336762 |
gatggtgcacaactgttggctctgaaactatcatccactcttctgttttcagcagcaactggtatgttgcttatcatgaacaagattcagccttcgcagc |
55336663 |
T |
|
| Q |
829 |
tcgctgaggaacagcgcagtgctacaagattgttcaaacaactatggactcaaatccaaaccaaaatcaatcttggtaatcttattacggaggaagatgt |
928 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
55336662 |
tcgctgaggaacagcgcaatgctacaagattgttcaaacaactatggactcaaatccaaaccaaaatcaatcttggtaatcttattactgaggaagatgt |
55336563 |
T |
|
| Q |
929 |
ggaatcttcattggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct |
1025 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336562 |
ggaatcttcattggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct |
55336466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 568 - 1026
Target Start/End: Complemental strand, 55331485 - 55331030
Alignment:
| Q |
568 |
tgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacagcgtcaaaattggaacaacctacttctaaacaa |
667 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||| || || ||||||| || |||||||||||||||||||||||||| |
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|
| T |
55331485 |
tgcaactctatgcaattttagattctgtatccgacagaatcgaaatgcacaacaacctcagccaacagcgacagaattggaacaacctacttctaaacaa |
55331386 |
T |
|
| Q |
668 |
cattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcatccact |
767 |
Q |
| |
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||| |||||||| ||||| ||||||||||||||||| ||| ||| || |||| ||||||| ||| | | ||| |||||||| |||||||||||||| |
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| T |
55331385 |
catcaacatgatcacacttactgctacaacattaaccggtgttgtggctgcaagtggtgctattggcaccccacttttggctcttaaactatcatccaca |
55331286 |
T |
|
| Q |
768 |
cttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcagtgctacaagattgttcaaac |
867 |
Q |
| |
|
||| | ||||| ||||| || |||| | ||||| |||||||| |||||||||||||| ||||| || ||||| | | ||||||||||| ||||||| |
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| T |
55331285 |
cttttattttctgcagctacaagtatacttcttattatgaacaaaattcagccttcgcaactcgcggaagaacaaagaaacgctacaagattattcaaac |
55331186 |
T |
|
| Q |
868 |
aactatggactcaaatccaaaccaaaatcaatcttggtaatcttattacggaggaagatgtggaatcttcattggagaaagtgttggcacttgacaaagc |
967 |
Q |
| |
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| || | | |||||| ||| || | | |||||| |||| || || |||||||| | | || |||||||||| ||||||||||||||||| |
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| T |
55331185 |
atcttcgaagccaaatcgaaaacacagttgctcttggaaatc---aaacagaacaagatgtgaagtgtttcatggagaaagttttggcacttgacaaagc |
55331089 |
T |
|
| Q |
968 |
ttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacctg |
1026 |
Q |
| |
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||||||||||||| | ||||| | |||||||||||| ||||||||||||||| |||||| |
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|
| T |
55331088 |
ttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctg |
55331030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 940 - 1026
Target Start/End: Original strand, 8395392 - 8395478
Alignment:
| Q |
940 |
tggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacctg |
1026 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||||| ||| |||| |
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|
| T |
8395392 |
tggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctg |
8395478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 940 - 1026
Target Start/End: Complemental strand, 8406180 - 8406094
Alignment:
| Q |
940 |
tggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacctg |
1026 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||||| ||| |||| |
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| T |
8406180 |
tggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctg |
8406094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 965 - 1026
Target Start/End: Complemental strand, 8368541 - 8368480
Alignment:
| Q |
965 |
agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacctg |
1026 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||| ||||||| || ||| |||||||||||||| |
|
|
| T |
8368541 |
agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
8368480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 965 - 1026
Target Start/End: Original strand, 8400869 - 8400930
Alignment:
| Q |
965 |
agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacctg |
1026 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||| ||||||| || ||| |||||||||||||| |
|
|
| T |
8400869 |
agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
8400930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 965 - 1026
Target Start/End: Original strand, 8422446 - 8422507
Alignment:
| Q |
965 |
agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacctg |
1026 |
Q |
| |
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|||||||||||| ||| ||||||||| |||| ||||||| || ||| |||||||||||||| |
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|
| T |
8422446 |
agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
8422507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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