View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_12 (Length: 298)
Name: NF2113_low_12
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 2841073 - 2841347
Alignment:
| Q |
19 |
gtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttctttgtctttgataaca |
118 |
Q |
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| T |
2841073 |
gtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttctttgtctttgataaca |
2841172 |
T |
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| Q |
119 |
agtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaatttatctatgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841173 |
agtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaatttatctatgta |
2841272 |
T |
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| Q |
219 |
tgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattatctac |
293 |
Q |
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| T |
2841273 |
tgtcagcttcccaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattagctac |
2841347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 2845760 - 2846034
Alignment:
| Q |
19 |
gtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttctttgtctttgataaca |
118 |
Q |
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| T |
2845760 |
gtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttctttgtctttgataaca |
2845859 |
T |
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| Q |
119 |
agtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaatttatctatgta |
218 |
Q |
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| T |
2845860 |
agtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaatttatctatgta |
2845959 |
T |
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| Q |
219 |
tgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattatctac |
293 |
Q |
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| T |
2845960 |
tgtcagcttcccaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattagctac |
2846034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 110 - 261
Target Start/End: Complemental strand, 2788323 - 2788172
Alignment:
| Q |
110 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaattt |
209 |
Q |
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| T |
2788323 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcacaatgcttcttgaatgttaacccgtattcatgaaattt |
2788224 |
T |
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| Q |
210 |
atctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatt |
261 |
Q |
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| T |
2788223 |
ttctatgtatttcagctttctaagactcctgaaagtgattaatagaattatt |
2788172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 110 - 280
Target Start/End: Complemental strand, 7363863 - 7363694
Alignment:
| Q |
110 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaattt |
209 |
Q |
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|||||||||||| |||| | ||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
7363863 |
ttgataacaagttgaaatttttttgttctatcaccaagtagtttagtaatttcccttcttcacaatacttcttgaatgttaatccgtattcatgaaattt |
7363764 |
T |
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| Q |
210 |
atctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagta |
280 |
Q |
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| T |
7363763 |
atctatgtatttaagcttcctaagactcctgaaagtgatt-ataaaattatttgtcagcgaaataagagta |
7363694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 2832301 - 2832208
Alignment:
| Q |
19 |
gtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttctttgtctttg |
112 |
Q |
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||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2832301 |
gtttcattaatattgtttttattttgattcatcgttttctccagccaagagaatgtatggtaaattggtaataatttgtgtttctttctctttg |
2832208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 2829578 - 2829526
Alignment:
| Q |
110 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttc |
162 |
Q |
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| T |
2829578 |
ttgataacatgtcgaaaaatctttgttctatcaccacgtagtttggtaatttc |
2829526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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