View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_14 (Length: 281)
Name: NF2113_low_14
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 6150015 - 6150268
Alignment:
| Q |
13 |
aatatacaaatgtatttccatcttactcctaatgtactcccttctaatgggctccggaatatgatgccaccattcaaacgtattaacaagtagagtaaga |
112 |
Q |
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| T |
6150015 |
aatatacaaacgtattcccatcttattcctaatgtactcccttctaatggactccggaatatgatgccaccattcaaacgtattaacaagtagagtaaga |
6150114 |
T |
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| Q |
113 |
cctatatttgctaaaccatttgcacaaaaatttc--ataccctgtagacgtgagatacagtgaaatgaatgttcctacaaaaggagacacaattgtacca |
210 |
Q |
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| T |
6150115 |
cctatatttgctaaaccatttgcacaaaaatttcatataccctgtagacgtgagatactgtgaaatgaatgttcctacaaaaggagacacaattgtacca |
6150214 |
T |
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| Q |
211 |
tttgtttttgaagggccatggaactaaagcatgagacttaaaggccaaagcagc |
264 |
Q |
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| T |
6150215 |
tttgtttctgaagggccatggaactaaagcatgagacttaaaggccaaagcagc |
6150268 |
T |
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Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 92 - 262
Target Start/End: Original strand, 15111452 - 15111622
Alignment:
| Q |
92 |
gtattaacaagtagagtaagacctatatttgctaaaccatttgcacaaaaatttcataccctgtagacgtgagatacagtgaaatgaatgttcctacaaa |
191 |
Q |
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| T |
15111452 |
gtattaacacgtagaataagacctatatttgctaaatcatctgcacaaaaatttccttccctatagatgtgagatactctgaaatgaatattcctacaga |
15111551 |
T |
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| Q |
192 |
aggagacacaattgtaccatttgtttttgaagggccatggaactaaagcatgagacttaaaggccaaagca |
262 |
Q |
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| T |
15111552 |
aggagacacaattgtaccatctgtttcttaagcgccaaggaactaaagcatgagacttaaaagccaaagca |
15111622 |
T |
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