View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_17 (Length: 243)
Name: NF2113_low_17
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 5293680 - 5293798
Alignment:
| Q |
5 |
aaaaaagggatcattcattgacatttagtaaagaactttctctgagtagaaagtagaaactgtaaaaagcaagaaaaagtgattaattggtcacaagatt |
104 |
Q |
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| T |
5293680 |
aaaaaagggatcattcattgacatttagtacagaactttctctgagtagaaagtagaaactgtaaaaagcaagaaaaagtgattaattggtcacaagatt |
5293779 |
T |
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| Q |
105 |
tgtggcgggtttctctttt |
123 |
Q |
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| T |
5293780 |
tgtggcgggtttctctttt |
5293798 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 5293831 - 5293902
Alignment:
| Q |
156 |
caataggaaacccacgttcctatttaacatttctaaccgtctttcacaactcaccgcatcactgttccactt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5293831 |
caataggaaacccacgttcctatttaacatttctaaccgtctttcacaactcaccgcatcactgttccactt |
5293902 |
T |
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