View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_19 (Length: 240)
Name: NF2113_low_19
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 10292452 - 10292227
Alignment:
| Q |
15 |
aaaatcaccacccaccatatcgatgaacaatgaatcatgatcgtacaatccatattttagtgtataatttgnnnnnnnaatataaaaataaagctttaaa |
114 |
Q |
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| T |
10292452 |
aaaatcaccaccgaccatattgatgaacattgaatcatgatcgtacggtccatattttagtgcataatttgtttttttaatataaaaataaagctataaa |
10292353 |
T |
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| Q |
115 |
tctgatatattcgatcttgttctattgatcattgatattgtgactgcatgaattaatgagatctctaacttcatatattcaatttgttgattttgtgata |
214 |
Q |
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| T |
10292352 |
tctgatatattcgatcttgttctattggacatcgatattgtgactgcatgaattaatgagatctctaacttcatatattcaatttgttgattttatgata |
10292253 |
T |
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| Q |
215 |
tgggcagagatgcagccaactcacgt |
240 |
Q |
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| T |
10292252 |
tgggcagagatgcagccaactcacgt |
10292227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 10321979 - 10321863
Alignment:
| Q |
20 |
caccacccaccatatcgatgaacaatgaatcatgatcgtacaatccatattttagtgtataat--ttg-nnnnnnnaatataaaaataaagctttaaatc |
116 |
Q |
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||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
10321979 |
caccatccaccatatcgatgaacactgaatcatgatcatacggtccatattttagtgtataattattgttttttttaatataaaaataaagctttaaata |
10321880 |
T |
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| Q |
117 |
tgatatattcgatcttg |
133 |
Q |
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| T |
10321879 |
tgatatattcgatcttg |
10321863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 10329912 - 10329976
Alignment:
| Q |
134 |
ttctattgatcattgatatt-gtgactgcatgaattaatgagatctctaacttcatatattcaat |
197 |
Q |
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| T |
10329912 |
ttctattggtcatcgatatttgtgactgcatgaattaatgagatctctaatttcatatattcaat |
10329976 |
T |
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