View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_21 (Length: 224)
Name: NF2113_low_21
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 37954917 - 37955112
Alignment:
| Q |
15 |
aaaggcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacat |
114 |
Q |
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| T |
37954917 |
aaaggcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacat |
37955016 |
T |
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| Q |
115 |
tggggtgaataataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaaaaacttcaaaagattggcaaaagt |
210 |
Q |
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| T |
37955017 |
tggggtgaataataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaataacttcaaaagattggcaaaagt |
37955112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 38073584 - 38073775
Alignment:
| Q |
19 |
gcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacattggg |
118 |
Q |
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| T |
38073584 |
gcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggg |
38073683 |
T |
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| Q |
119 |
gtgaataataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaaaaacttcaaaagattggcaaaagt |
210 |
Q |
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| T |
38073684 |
gtgaataacattaatggatacacaagctacaagcaagctagtatttggggtgttaagtacttcaagaacaacttcaaaagattggcaaaagt |
38073775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 38061197 - 38061013
Alignment:
| Q |
26 |
aattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacattggggtgaata |
125 |
Q |
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| T |
38061197 |
aattggattagaaaactgtatagttttatggaaccttttgtttcaaagtcaccaagagctgcatatatcaattatagagatcttgatattggggtgaata |
38061098 |
T |
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| Q |
126 |
ataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaaaaacttcaaaagattggcaaaagt |
210 |
Q |
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| T |
38061097 |
ataacaatggatacacaagctacaagcaagctagtatttggggtgttaagtacttcaagaacaacttcaaaagattggtaaaagt |
38061013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 38087094 - 38087286
Alignment:
| Q |
19 |
gcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacattggg |
118 |
Q |
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| T |
38087094 |
gcacattaattggattagaaaactgtatagttatatggaaccttttgttacaaagtctccgagagctgcatatattaattacagagaccttgatattggt |
38087193 |
T |
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| Q |
119 |
gtgaataataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaaaaacttcaaaagattggcaaaagtt |
211 |
Q |
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| T |
38087194 |
gtgaataacattaatgggtacacaagctataaggaagctagtatttggggtgttaagtacttcaaaaataacttcaaaaggttggcaaaagtt |
38087286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 38082666 - 38082854
Alignment:
| Q |
19 |
gcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacattggg |
118 |
Q |
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| T |
38082666 |
gcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagaccttgatattggt |
38082765 |
T |
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| Q |
119 |
gtgaataataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaaaaacttcaaaagattggcaaa |
207 |
Q |
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| T |
38082766 |
gtgaataacattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaa |
38082854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 38059257 - 38059433
Alignment:
| Q |
26 |
aattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacattggggtgaata |
125 |
Q |
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||||||||| ||||| | || | ||||||||||||||||||||||||||||||||||| ||||||| | || |||||||| ||||| ||||||||||||| |
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| T |
38059257 |
aattggattggaaaattgtacagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaactatagagatcttgatattggggtgaata |
38059356 |
T |
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| Q |
126 |
ataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaaaaacttcaaaagattg |
202 |
Q |
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||| ||||||||||||||||| ||| ||||||| | ||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
38059357 |
atattaatggatacacaagctacaagcaagctagtgtttggggtgttaaatactttaagaacaacttcaaaagattg |
38059433 |
T |
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