View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_22 (Length: 222)
Name: NF2113_low_22
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 12924136 - 12924341
Alignment:
| Q |
1 |
tacattttcaacacctactaacagcattaacagccacatcatccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaac |
100 |
Q |
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| T |
12924136 |
tacattttcaacacctactaacagcattaacagccacatcatccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaac |
12924235 |
T |
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| Q |
101 |
aaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtct |
200 |
Q |
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| T |
12924236 |
aaacaaaatcacctcaagtctaagaacggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtct |
12924335 |
T |
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| Q |
201 |
acaatc |
206 |
Q |
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|||||| |
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| T |
12924336 |
acaatc |
12924341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 30791522 - 30791373
Alignment:
| Q |
1 |
tacattttcaacacctactaacagcattaa-cagccacatcatccaagtatatgaatgcaattataaa-ccttccatcaaaagactaatacaaattaaga |
98 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||| ||| |
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| T |
30791522 |
tacattttcaacacctactaacaacattaatcagccacatcatccaagt-------tacagtaataaaaccttccatcaaaagactaatacaaattgaga |
30791430 |
T |
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| Q |
99 |
acaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatga |
155 |
Q |
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| T |
30791429 |
acaaaccaaatcacctgaagtctaagaacagatattgtatcacttgcacatcaatga |
30791373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 22382395 - 22382461
Alignment:
| Q |
96 |
agaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaa |
162 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
22382395 |
agaacaaaccaaatcacctcaagtctaagaacagatattgtatcacttgcacatcaatgtatagaaa |
22382461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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