View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_5 (Length: 456)
Name: NF2113_low_5
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 3422526 - 3422780
Alignment:
| Q |
18 |
agaagtctcacattatttgggagtcgaggtcaatgaccgtttatattcaacacacacactcctcaaaccaacgaaacgtcgtttataaaagataaaacca |
117 |
Q |
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| T |
3422526 |
agaagtctcacattatttgagagtcgaggtcaatgaccgtttatattcaacgcacacactcctcaaaccaacaaaacgtcatttataaaagataaaacca |
3422625 |
T |
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| Q |
118 |
tagaggacttaaactcaaaacagacactacctcgaaacacagtgggacgtacttagggtggaatggaataattaaatatgctatgttattcactaatcga |
217 |
Q |
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| T |
3422626 |
tagagaacttaaactcaagagagataataccttgaaacacggtgggacttacttagggtggaatggaataattaaatatgctatgttattcactaatcga |
3422725 |
T |
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| Q |
218 |
accatgtggtctttaaaccaaaatgaaggtataaaataaagtaatttgatatagt |
272 |
Q |
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| T |
3422726 |
accatgtggtctttaaaccaaaatgaagttataaaataaagtaatttgatatagt |
3422780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 330 - 445
Target Start/End: Original strand, 3422838 - 3422953
Alignment:
| Q |
330 |
ttgtactgtattcaagacagcctgtggaccatttacccactttcacagaacacagtacaaaatttatgtagattcttcactctccaaaatctatcacagt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3422838 |
ttgtactgtattcaagacagcctgtggaccatttacccactttcacagaacacagtacaaaatttatgtagattcttcactctccaaaatctatcacagt |
3422937 |
T |
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| Q |
430 |
tcatcattagattcat |
445 |
Q |
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| T |
3422938 |
tcatcattagattcat |
3422953 |
T |
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