View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_6 (Length: 435)
Name: NF2113_low_6
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 27 - 426
Target Start/End: Original strand, 2424675 - 2425094
Alignment:
| Q |
27 |
cactaataatatcgataaaaacatctcctccaaaccactttattatactagttaagttttgtgttttttcttgtagtaagatatagtagttattgagcaa |
126 |
Q |
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| T |
2424675 |
cactaataatatcgataaaaacatctcctcgaaaccactttattatactagttaagttttgtgttttttcttgtagtaagatatagt---tattgagcaa |
2424771 |
T |
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| Q |
127 |
ta--ctagtaataaggatcaatatgagttgtccgttgactacatgcaattaactacacagatatatagttcgttcaattaatttactacgatcgcaattt |
224 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
2424772 |
tatactagtaataaggatcaatacgagttgtccgttgactacatgcaattaactacaccgata----gttcgttcaattaatttactatgatcgcaattt |
2424867 |
T |
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| Q |
225 |
tta------------gatctaaaaatattgaaat------------ccaaacatcgatctagtcttgatcga-caatcataaatttgattgactgcagta |
299 |
Q |
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| T |
2424868 |
ttaaatcgtagtttagatctaaaaatattgaaatatgcattgaaatccaaacatcgatctagtcttgatcgaacaatcataaatttgattgactgcagtt |
2424967 |
T |
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| Q |
300 |
agttatatgattgtaactacgcacaatccaacctacttatagtaatacaatcttctaagtctaattacgattctttatgacacttatttggtgaaatcta |
399 |
Q |
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| T |
2424968 |
agttatatgattgtaactacgcacaatccaacctacttatagtaatacaatcttctaagtctaattacgattctttatgacacttatttggtgaaatcta |
2425067 |
T |
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| Q |
400 |
ggtagatctatgaactcatagtattat |
426 |
Q |
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| T |
2425068 |
ggtagatctatgaactcatagtattat |
2425094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 2433368 - 2433491
Alignment:
| Q |
21 |
actccacactaataatatcgataaaaa-catctcctccaaaccactttatta--tactagttaagttttgtg-ttttttcttgtagtaagatatagtagt |
116 |
Q |
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| T |
2433368 |
actccacaccaataatatggttaaaaaacatcccctccaaaccaccttattaactcctagttaagttttgtggttttttcttttagaaagatatggt--- |
2433464 |
T |
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| Q |
117 |
tattgagcaata--ctagtaataagga |
141 |
Q |
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||| |||||||| ||||||||||||| |
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| T |
2433465 |
tatagagcaatatactagtaataagga |
2433491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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