View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2113_low_8 (Length: 405)
Name: NF2113_low_8
Description: NF2113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2113_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 18929137 - 18928762
Alignment:
| Q |
15 |
gatttgtcatattataagagtttaactcattctactagatccaatctcaatttagtatacgcatgtctttttcttaacatg-cttttataatacgtgtgc |
113 |
Q |
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| T |
18929137 |
gatttgtcacattataagagtttaactcattctactagaaccaatctcaatttagtctacatatgtcttt--cttaacatgacttttataatacatgcgc |
18929040 |
T |
|
| Q |
114 |
atatgcatatcaataaaactatgcaatgtcctatataaggacaacaactctgttttgaaaaagagagacctttaacgcaattccagtatccccttcgaac |
213 |
Q |
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| T |
18929039 |
atatgcatatcaataaaactatgcaatgtcctatataaggacaacaattctgttttgaaaaagggagaccttcaacgcaattccagcatccccttcgaac |
18928940 |
T |
|
| Q |
214 |
aatggtcgtcggcaagagtctaaaaccacctttctacatcaaataacatccatcatttcattttgaagttgtttgaagtctaagcttggagatttgaaac |
313 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
18928939 |
aatggtcgtcgccaagagtctaaaaccacctttctacatcaaataccatccatcatttcatcttgaagttgtttatagtctaagcttggagatttgaaac |
18928840 |
T |
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| Q |
314 |
cttaataggtactaagttagtgagtgcaaagaagctcacagttgctatacttggcttgcattcttctccttgtaactt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18928839 |
cttaataggtactaagttagtgagtgcaaagaagctcacagttgctatacttggcttgcattcttctccttgtaactt |
18928762 |
T |
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